Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03775 and AMB_RS03780 are separated by 42 nucleotides AMB_RS03780 and AMB_RS03785 are separated by 103 nucleotides AMB_RS03785 and AMB_RS03790 are separated by 0 nucleotides AMB_RS03790 and AMB_RS03795 are separated by 266 nucleotides
AMB_RS03775: AMB_RS03775 - hypothetical protein, at 798,781 to 799,044
_RS03775
AMB_RS03780: AMB_RS03780 - hypothetical protein, at 799,087 to 799,332
_RS03780
AMB_RS03785: AMB_RS03785 - hemerythrin, at 799,436 to 799,840
_RS03785
AMB_RS03790: AMB_RS03790 - aminopeptidase P family protein, at 799,841 to 801,652
_RS03790
AMB_RS03795: AMB_RS03795 - hypothetical protein, at 801,919 to 802,755
_RS03795
Position (kb) 799
800
801
802 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 798.887 kb on + strand, within AMB_RS03775 at 798.887 kb on + strand, within AMB_RS03775 at 798.887 kb on + strand, within AMB_RS03775 at 798.887 kb on + strand, within AMB_RS03775 at 798.888 kb on - strand, within AMB_RS03775 at 799.053 kb on - strand at 799.063 kb on + strand at 799.063 kb on + strand at 799.063 kb on + strand at 799.064 kb on - strand at 799.064 kb on - strand at 799.069 kb on + strand at 799.070 kb on - strand at 799.070 kb on - strand at 799.113 kb on + strand, within AMB_RS03780 at 799.113 kb on + strand, within AMB_RS03780 at 799.114 kb on - strand, within AMB_RS03780 at 799.241 kb on + strand, within AMB_RS03780 at 799.354 kb on - strand at 799.396 kb on + strand at 799.742 kb on + strand, within AMB_RS03785 at 799.743 kb on - strand, within AMB_RS03785 at 799.743 kb on - strand, within AMB_RS03785 at 799.793 kb on + strand, within AMB_RS03785 at 799.796 kb on + strand, within AMB_RS03785 at 799.796 kb on + strand, within AMB_RS03785 at 799.796 kb on + strand, within AMB_RS03785 at 799.797 kb on - strand, within AMB_RS03785 at 799.797 kb on - strand, within AMB_RS03785 at 799.797 kb on - strand, within AMB_RS03785 at 799.797 kb on - strand, within AMB_RS03785 at 799.797 kb on - strand, within AMB_RS03785 at 799.839 kb on - strand at 799.839 kb on - strand at 799.842 kb on + strand at 799.843 kb on - strand at 799.843 kb on - strand at 799.930 kb on - strand at 800.109 kb on + strand, within AMB_RS03790 at 800.109 kb on + strand, within AMB_RS03790 at 800.110 kb on - strand, within AMB_RS03790 at 800.110 kb on - strand, within AMB_RS03790 at 800.455 kb on - strand, within AMB_RS03790 at 800.455 kb on - strand, within AMB_RS03790 at 800.976 kb on + strand, within AMB_RS03790 at 801.007 kb on + strand, within AMB_RS03790 at 801.008 kb on - strand, within AMB_RS03790 at 801.010 kb on - strand, within AMB_RS03790 at 801.010 kb on - strand, within AMB_RS03790 at 801.010 kb on - strand, within AMB_RS03790 at 801.290 kb on - strand, within AMB_RS03790 at 801.421 kb on + strand, within AMB_RS03790 at 801.422 kb on - strand, within AMB_RS03790 at 801.531 kb on + strand at 801.663 kb on + strand at 801.719 kb on + strand at 801.762 kb on - strand at 801.762 kb on - strand at 801.788 kb on - strand at 801.837 kb on + strand at 801.841 kb on + strand at 801.842 kb on - strand at 801.866 kb on - strand at 801.870 kb on + strand at 802.135 kb on + strand, within AMB_RS03795 at 802.136 kb on - strand, within AMB_RS03795 at 802.408 kb on + strand, within AMB_RS03795 at 802.408 kb on + strand, within AMB_RS03795 at 802.408 kb on + strand, within AMB_RS03795 at 802.409 kb on - strand, within AMB_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 798,887 + AMB_RS03775 0.40 -0.9 798,887 + AMB_RS03775 0.40 -1.2 798,887 + AMB_RS03775 0.40 -0.2 798,887 + AMB_RS03775 0.40 -0.6 798,888 - AMB_RS03775 0.41 +0.3 799,053 - +0.4 799,063 + +0.5 799,063 + -0.9 799,063 + -0.2 799,064 - -1.8 799,064 - +0.2 799,069 + +0.7 799,070 - +0.4 799,070 - +0.5 799,113 + AMB_RS03780 0.11 +1.4 799,113 + AMB_RS03780 0.11 -1.9 799,114 - AMB_RS03780 0.11 +0.4 799,241 + AMB_RS03780 0.63 -2.3 799,354 - +0.5 799,396 + +0.0 799,742 + AMB_RS03785 0.76 -1.2 799,743 - AMB_RS03785 0.76 -0.6 799,743 - AMB_RS03785 0.76 -0.6 799,793 + AMB_RS03785 0.88 -0.2 799,796 + AMB_RS03785 0.89 -1.9 799,796 + AMB_RS03785 0.89 -0.4 799,796 + AMB_RS03785 0.89 +0.5 799,797 - AMB_RS03785 0.89 +0.0 799,797 - AMB_RS03785 0.89 -0.6 799,797 - AMB_RS03785 0.89 +0.4 799,797 - AMB_RS03785 0.89 +1.4 799,797 - AMB_RS03785 0.89 -1.2 799,839 - -1.6 799,839 - -0.3 799,842 + +0.4 799,843 - -0.4 799,843 - -0.3 799,930 - +0.4 800,109 + AMB_RS03790 0.15 -1.4 800,109 + AMB_RS03790 0.15 -0.6 800,110 - AMB_RS03790 0.15 -0.1 800,110 - AMB_RS03790 0.15 +0.0 800,455 - AMB_RS03790 0.34 +0.2 800,455 - AMB_RS03790 0.34 +0.7 800,976 + AMB_RS03790 0.63 -1.0 801,007 + AMB_RS03790 0.64 -0.9 801,008 - AMB_RS03790 0.64 -0.4 801,010 - AMB_RS03790 0.65 +0.4 801,010 - AMB_RS03790 0.65 +1.0 801,010 - AMB_RS03790 0.65 +0.3 801,290 - AMB_RS03790 0.80 +1.4 801,421 + AMB_RS03790 0.87 +0.3 801,422 - AMB_RS03790 0.87 -0.1 801,531 + -1.2 801,663 + -0.3 801,719 + +0.3 801,762 - +0.3 801,762 - -2.9 801,788 - +0.4 801,837 + +1.4 801,841 + -1.2 801,842 - -0.1 801,866 - +0.4 801,870 + +0.4 802,135 + AMB_RS03795 0.26 -0.2 802,136 - AMB_RS03795 0.26 -0.3 802,408 + AMB_RS03795 0.58 -0.1 802,408 + AMB_RS03795 0.58 +0.4 802,408 + AMB_RS03795 0.58 -0.7 802,409 - AMB_RS03795 0.59 -0.6
Or see this region's nucleotide sequence