Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03725 and AMB_RS03730 are separated by 68 nucleotides AMB_RS03730 and AMB_RS03735 are separated by 108 nucleotides
AMB_RS03725: AMB_RS03725 - DNA helicase II, at 786,036 to 788,321
_RS03725
AMB_RS03730: AMB_RS03730 - 50S ribosomal protein L11 methyltransferase, at 788,390 to 789,289
_RS03730
AMB_RS03735: AMB_RS03735 - methyl-accepting chemotaxis protein, at 789,398 to 790,561
_RS03735
AMB_RS23145: AMB_RS23145 - hypothetical protein, at 790,246 to 791,394
_RS23145
Position (kb) 788
789
790 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 787.678 kb on - strand, within AMB_RS03725 at 787.896 kb on + strand, within AMB_RS03725 at 787.896 kb on + strand, within AMB_RS03725 at 787.896 kb on + strand, within AMB_RS03725 at 787.897 kb on - strand, within AMB_RS03725 at 787.959 kb on + strand, within AMB_RS03725 at 787.959 kb on + strand, within AMB_RS03725 at 787.959 kb on + strand, within AMB_RS03725 at 787.960 kb on - strand, within AMB_RS03725 at 788.320 kb on - strand at 788.818 kb on + strand, within AMB_RS03730 at 788.819 kb on - strand, within AMB_RS03730 at 788.819 kb on - strand, within AMB_RS03730 at 789.077 kb on + strand, within AMB_RS03730 at 789.077 kb on + strand, within AMB_RS03730 at 789.077 kb on + strand, within AMB_RS03730 at 789.078 kb on - strand, within AMB_RS03730 at 789.078 kb on - strand, within AMB_RS03730 at 789.306 kb on + strand at 789.307 kb on - strand at 789.345 kb on - strand at 789.375 kb on + strand at 789.375 kb on + strand at 789.375 kb on + strand at 789.376 kb on - strand at 789.376 kb on - strand at 789.376 kb on - strand at 789.376 kb on - strand at 789.497 kb on + strand at 789.497 kb on + strand at 789.498 kb on - strand at 789.498 kb on - strand at 789.498 kb on - strand at 789.498 kb on - strand at 789.498 kb on - strand at 789.602 kb on + strand, within AMB_RS03735 at 789.602 kb on + strand, within AMB_RS03735 at 789.602 kb on + strand, within AMB_RS03735 at 789.602 kb on + strand, within AMB_RS03735 at 789.603 kb on - strand, within AMB_RS03735 at 789.603 kb on - strand, within AMB_RS03735 at 789.603 kb on - strand, within AMB_RS03735 at 789.603 kb on - strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.636 kb on - strand, within AMB_RS03735 at 789.636 kb on - strand, within AMB_RS03735 at 789.636 kb on - strand, within AMB_RS03735 at 789.636 kb on - strand, within AMB_RS03735 at 789.636 kb on - strand, within AMB_RS03735 at 789.938 kb on + strand, within AMB_RS03735
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 787,678 - AMB_RS03725 0.72 -1.7 787,896 + AMB_RS03725 0.81 -0.9 787,896 + AMB_RS03725 0.81 -0.9 787,896 + AMB_RS03725 0.81 -1.0 787,897 - AMB_RS03725 0.81 -1.9 787,959 + AMB_RS03725 0.84 -3.4 787,959 + AMB_RS03725 0.84 -1.8 787,959 + AMB_RS03725 0.84 -3.3 787,960 - AMB_RS03725 0.84 -1.6 788,320 - +0.3 788,818 + AMB_RS03730 0.48 +0.3 788,819 - AMB_RS03730 0.48 -2.2 788,819 - AMB_RS03730 0.48 -0.6 789,077 + AMB_RS03730 0.76 -0.6 789,077 + AMB_RS03730 0.76 -0.5 789,077 + AMB_RS03730 0.76 +0.2 789,078 - AMB_RS03730 0.76 -1.6 789,078 - AMB_RS03730 0.76 -0.7 789,306 + -0.3 789,307 - -1.4 789,345 - +0.4 789,375 + +0.4 789,375 + -0.8 789,375 + +0.9 789,376 - -0.2 789,376 - +0.1 789,376 - -0.6 789,376 - +0.9 789,497 + -0.9 789,497 + +0.2 789,498 - +1.0 789,498 - -0.7 789,498 - -1.6 789,498 - +0.0 789,498 - +0.2 789,602 + AMB_RS03735 0.18 +0.0 789,602 + AMB_RS03735 0.18 +0.1 789,602 + AMB_RS03735 0.18 -0.2 789,602 + AMB_RS03735 0.18 -1.2 789,603 - AMB_RS03735 0.18 -0.5 789,603 - AMB_RS03735 0.18 -0.3 789,603 - AMB_RS03735 0.18 -2.5 789,603 - AMB_RS03735 0.18 -0.9 789,635 + AMB_RS03735 0.20 -3.1 789,635 + AMB_RS03735 0.20 -0.2 789,635 + AMB_RS03735 0.20 +0.5 789,635 + AMB_RS03735 0.20 +1.1 789,635 + AMB_RS03735 0.20 +0.1 789,635 + AMB_RS03735 0.20 +1.4 789,636 - AMB_RS03735 0.20 -0.6 789,636 - AMB_RS03735 0.20 +0.1 789,636 - AMB_RS03735 0.20 +0.2 789,636 - AMB_RS03735 0.20 -1.4 789,636 - AMB_RS03735 0.20 -2.5 789,938 + AMB_RS03735 0.46 -1.1
Or see this region's nucleotide sequence