Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03710 and AMB_RS03715 are separated by 170 nucleotides AMB_RS03715 and AMB_RS03720 are separated by 57 nucleotides AMB_RS03720 and AMB_RS03725 are separated by 262 nucleotides
AMB_RS03710: AMB_RS03710 - acyl-CoA transferase/carnitine dehydratase, at 782,703 to 784,160
_RS03710
AMB_RS03715: AMB_RS03715 - hemerythrin, at 784,331 to 785,158
_RS03715
AMB_RS03720: AMB_RS03720 - hypothetical protein, at 785,216 to 785,773
_RS03720
AMB_RS03725: AMB_RS03725 - DNA helicase II, at 786,036 to 788,321
_RS03725
Position (kb) 784
785
786 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 783.847 kb on + strand, within AMB_RS03710 at 783.847 kb on + strand, within AMB_RS03710 at 783.848 kb on - strand, within AMB_RS03710 at 783.848 kb on - strand, within AMB_RS03710 at 783.848 kb on - strand, within AMB_RS03710 at 783.848 kb on - strand, within AMB_RS03710 at 783.862 kb on + strand, within AMB_RS03710 at 783.863 kb on - strand, within AMB_RS03710 at 783.872 kb on + strand, within AMB_RS03710 at 783.872 kb on + strand, within AMB_RS03710 at 783.872 kb on + strand, within AMB_RS03710 at 783.872 kb on + strand, within AMB_RS03710 at 783.873 kb on - strand, within AMB_RS03710 at 784.048 kb on + strand at 784.048 kb on + strand at 784.048 kb on + strand at 784.482 kb on + strand, within AMB_RS03715 at 784.482 kb on + strand, within AMB_RS03715 at 784.482 kb on + strand, within AMB_RS03715 at 784.483 kb on - strand, within AMB_RS03715 at 784.483 kb on - strand, within AMB_RS03715 at 784.483 kb on - strand, within AMB_RS03715 at 784.483 kb on - strand, within AMB_RS03715 at 784.483 kb on - strand, within AMB_RS03715 at 784.875 kb on + strand, within AMB_RS03715 at 784.948 kb on - strand, within AMB_RS03715 at 784.999 kb on - strand, within AMB_RS03715 at 784.999 kb on - strand, within AMB_RS03715 at 785.193 kb on + strand at 785.193 kb on + strand at 785.193 kb on + strand at 785.193 kb on + strand at 785.193 kb on + strand at 785.198 kb on + strand at 785.199 kb on - strand at 785.199 kb on - strand at 785.199 kb on - strand at 785.217 kb on + strand at 785.217 kb on + strand at 785.217 kb on + strand at 785.218 kb on - strand at 785.218 kb on - strand at 785.218 kb on - strand at 785.218 kb on - strand at 785.218 kb on - strand at 785.218 kb on - strand at 785.221 kb on - strand at 785.221 kb on - strand at 785.221 kb on - strand at 785.221 kb on - strand at 785.221 kb on - strand at 785.302 kb on - strand, within AMB_RS03720 at 785.340 kb on + strand, within AMB_RS03720 at 785.341 kb on - strand, within AMB_RS03720 at 785.341 kb on - strand, within AMB_RS03720 at 785.341 kb on - strand, within AMB_RS03720 at 785.343 kb on + strand, within AMB_RS03720 at 785.343 kb on + strand, within AMB_RS03720 at 785.343 kb on + strand, within AMB_RS03720 at 785.466 kb on + strand, within AMB_RS03720 at 785.466 kb on + strand, within AMB_RS03720 at 785.466 kb on + strand, within AMB_RS03720 at 785.466 kb on + strand, within AMB_RS03720 at 785.466 kb on + strand, within AMB_RS03720 at 785.467 kb on - strand, within AMB_RS03720 at 785.467 kb on - strand, within AMB_RS03720 at 785.467 kb on - strand, within AMB_RS03720 at 785.467 kb on - strand, within AMB_RS03720 at 785.467 kb on - strand, within AMB_RS03720 at 785.467 kb on - strand, within AMB_RS03720 at 785.467 kb on - strand, within AMB_RS03720 at 785.521 kb on + strand, within AMB_RS03720 at 785.523 kb on + strand, within AMB_RS03720 at 785.523 kb on + strand, within AMB_RS03720 at 785.523 kb on + strand, within AMB_RS03720 at 785.524 kb on - strand, within AMB_RS03720 at 785.524 kb on - strand, within AMB_RS03720 at 785.524 kb on - strand, within AMB_RS03720 at 785.524 kb on - strand, within AMB_RS03720 at 785.524 kb on - strand, within AMB_RS03720 at 785.791 kb on - strand at 785.809 kb on + strand at 785.809 kb on + strand at 785.809 kb on + strand at 785.809 kb on + strand at 785.810 kb on - strand at 785.810 kb on - strand at 785.810 kb on - strand at 785.879 kb on + strand at 785.880 kb on - strand at 785.880 kb on - strand at 785.880 kb on - strand at 785.914 kb on + strand at 785.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 783,847 + AMB_RS03710 0.78 +0.5 783,847 + AMB_RS03710 0.78 -0.3 783,848 - AMB_RS03710 0.79 +0.1 783,848 - AMB_RS03710 0.79 -2.8 783,848 - AMB_RS03710 0.79 +1.0 783,848 - AMB_RS03710 0.79 -0.6 783,862 + AMB_RS03710 0.79 -0.9 783,863 - AMB_RS03710 0.80 -0.9 783,872 + AMB_RS03710 0.80 -0.6 783,872 + AMB_RS03710 0.80 -0.6 783,872 + AMB_RS03710 0.80 -2.1 783,872 + AMB_RS03710 0.80 -0.7 783,873 - AMB_RS03710 0.80 +0.1 784,048 + +0.4 784,048 + -0.9 784,048 + -2.1 784,482 + AMB_RS03715 0.18 -0.1 784,482 + AMB_RS03715 0.18 -0.9 784,482 + AMB_RS03715 0.18 -1.2 784,483 - AMB_RS03715 0.18 +0.7 784,483 - AMB_RS03715 0.18 -2.3 784,483 - AMB_RS03715 0.18 -1.4 784,483 - AMB_RS03715 0.18 +0.3 784,483 - AMB_RS03715 0.18 +0.3 784,875 + AMB_RS03715 0.66 -0.2 784,948 - AMB_RS03715 0.75 -0.9 784,999 - AMB_RS03715 0.81 +1.2 784,999 - AMB_RS03715 0.81 -0.9 785,193 + -1.6 785,193 + -0.8 785,193 + -0.2 785,193 + -0.2 785,193 + -0.2 785,198 + +0.1 785,199 - +0.4 785,199 - -1.8 785,199 - +0.3 785,217 + +0.4 785,217 + -0.6 785,217 + -0.4 785,218 - -1.5 785,218 - +0.2 785,218 - -0.3 785,218 - -0.1 785,218 - -0.6 785,218 - +0.5 785,221 - -1.9 785,221 - +0.3 785,221 - -0.2 785,221 - -0.9 785,221 - +0.0 785,302 - AMB_RS03720 0.15 +0.2 785,340 + AMB_RS03720 0.22 +0.0 785,341 - AMB_RS03720 0.22 -0.6 785,341 - AMB_RS03720 0.22 +0.4 785,341 - AMB_RS03720 0.22 +0.4 785,343 + AMB_RS03720 0.23 +0.2 785,343 + AMB_RS03720 0.23 -1.2 785,343 + AMB_RS03720 0.23 +0.1 785,466 + AMB_RS03720 0.45 -1.8 785,466 + AMB_RS03720 0.45 +0.5 785,466 + AMB_RS03720 0.45 +0.8 785,466 + AMB_RS03720 0.45 -1.2 785,466 + AMB_RS03720 0.45 -0.3 785,467 - AMB_RS03720 0.45 +0.1 785,467 - AMB_RS03720 0.45 -0.6 785,467 - AMB_RS03720 0.45 +0.5 785,467 - AMB_RS03720 0.45 -1.2 785,467 - AMB_RS03720 0.45 -0.9 785,467 - AMB_RS03720 0.45 -0.2 785,467 - AMB_RS03720 0.45 +1.4 785,521 + AMB_RS03720 0.55 +0.4 785,523 + AMB_RS03720 0.55 -0.6 785,523 + AMB_RS03720 0.55 +0.3 785,523 + AMB_RS03720 0.55 +0.7 785,524 - AMB_RS03720 0.55 +0.2 785,524 - AMB_RS03720 0.55 +0.1 785,524 - AMB_RS03720 0.55 -0.9 785,524 - AMB_RS03720 0.55 -0.1 785,524 - AMB_RS03720 0.55 -2.5 785,791 - -1.2 785,809 + -2.3 785,809 + -0.6 785,809 + +1.4 785,809 + +0.1 785,810 - -0.6 785,810 - -0.9 785,810 - +1.2 785,879 + +0.3 785,880 - +0.2 785,880 - -0.2 785,880 - +1.4 785,914 + -0.2 785,915 - +0.4
Or see this region's nucleotide sequence