Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03455

Experiment: 30_an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS03450 and AMB_RS03455 are separated by 203 nucleotidesAMB_RS03455 and AMB_RS03460 are separated by 86 nucleotides AMB_RS03445: AMB_RS03445 - hypothetical protein, at 720,677 to 720,904 _RS03445 AMB_RS03450: AMB_RS03450 - DUF4239 domain-containing protein, at 720,874 to 721,680 _RS03450 AMB_RS03455: AMB_RS03455 - hypothetical protein, at 721,884 to 722,300 _RS03455 AMB_RS03460: AMB_RS03460 - hydroxymethylglutaryl-CoA lyase, at 722,387 to 723,280 _RS03460 Position (kb) 721 722 723Strain fitness (log2 ratio) -3 -2 -1 0 1at 721.156 kb on + strand, within AMB_RS03450at 721.156 kb on + strand, within AMB_RS03450at 721.343 kb on + strand, within AMB_RS03450at 721.344 kb on - strand, within AMB_RS03450at 721.344 kb on - strand, within AMB_RS03450at 721.436 kb on + strand, within AMB_RS03450at 721.436 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.583 kb on - strand, within AMB_RS03450at 721.583 kb on - strand, within AMB_RS03450at 721.649 kb on + strandat 721.649 kb on + strandat 721.649 kb on + strandat 721.650 kb on - strandat 721.650 kb on - strandat 721.650 kb on - strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.680 kb on + strandat 721.681 kb on - strandat 721.706 kb on + strandat 721.706 kb on + strandat 721.707 kb on - strandat 721.742 kb on - strandat 721.839 kb on + strandat 721.839 kb on + strandat 721.845 kb on + strandat 721.865 kb on + strandat 721.865 kb on + strandat 721.866 kb on - strandat 721.948 kb on + strand, within AMB_RS03455at 721.948 kb on + strand, within AMB_RS03455at 721.949 kb on - strand, within AMB_RS03455at 722.092 kb on + strand, within AMB_RS03455at 722.099 kb on + strand, within AMB_RS03455at 722.099 kb on + strand, within AMB_RS03455at 722.099 kb on + strand, within AMB_RS03455at 722.099 kb on + strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.354 kb on - strandat 722.356 kb on - strandat 722.356 kb on - strandat 722.356 kb on - strandat 722.388 kb on + strandat 722.388 kb on + strandat 722.388 kb on + strandat 722.389 kb on - strandat 722.389 kb on - strandat 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.747 kb on - strand, within AMB_RS03460at 722.747 kb on - strand, within AMB_RS03460at 722.766 kb on + strand, within AMB_RS03460at 722.766 kb on + strand, within AMB_RS03460at 722.767 kb on - strand, within AMB_RS03460at 722.767 kb on - strand, within AMB_RS03460at 722.832 kb on + strand, within AMB_RS03460at 722.832 kb on + strand, within AMB_RS03460at 722.833 kb on - strand, within AMB_RS03460at 722.833 kb on - strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.860 kb on - strand, within AMB_RS03460at 722.860 kb on - strand, within AMB_RS03460at 722.860 kb on - strand, within AMB_RS03460at 722.860 kb on - strand, within AMB_RS03460at 722.860 kb on - strand, within AMB_RS03460at 723.041 kb on - strand, within AMB_RS03460at 723.041 kb on - strand, within AMB_RS03460at 723.041 kb on - strand, within AMB_RS03460at 723.051 kb on + strand, within AMB_RS03460at 723.051 kb on + strand, within AMB_RS03460at 723.052 kb on - strand, within AMB_RS03460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
remove
721,156 + AMB_RS03450 0.35 -1.6
721,156 + AMB_RS03450 0.35 +0.0
721,343 + AMB_RS03450 0.58 -0.6
721,344 - AMB_RS03450 0.58 +0.2
721,344 - AMB_RS03450 0.58 -0.2
721,436 + AMB_RS03450 0.70 -1.2
721,436 + AMB_RS03450 0.70 -1.9
721,582 + AMB_RS03450 0.88 -1.2
721,582 + AMB_RS03450 0.88 +0.2
721,582 + AMB_RS03450 0.88 -0.6
721,582 + AMB_RS03450 0.88 -1.8
721,582 + AMB_RS03450 0.88 -0.2
721,582 + AMB_RS03450 0.88 -0.3
721,583 - AMB_RS03450 0.88 +0.1
721,583 - AMB_RS03450 0.88 +0.0
721,649 + -0.9
721,649 + -1.2
721,649 + +0.2
721,650 - +1.2
721,650 - -0.6
721,650 - +0.1
721,658 + -0.1
721,658 + +0.9
721,658 + +0.7
721,658 + -1.8
721,658 + -0.1
721,658 + -0.2
721,658 + -0.5
721,659 - +0.8
721,659 - +0.6
721,659 - -1.4
721,659 - -0.6
721,659 - -0.1
721,659 - +0.1
721,659 - -0.9
721,680 + -1.2
721,681 - -0.6
721,706 + +0.0
721,706 + -1.8
721,707 - +0.1
721,742 - -0.9
721,839 + -1.3
721,839 + +0.4
721,845 + -0.9
721,865 + -0.9
721,865 + +0.4
721,866 - -2.6
721,948 + AMB_RS03455 0.15 -2.1
721,948 + AMB_RS03455 0.15 -0.6
721,949 - AMB_RS03455 0.16 +0.3
722,092 + AMB_RS03455 0.50 -0.9
722,099 + AMB_RS03455 0.52 -1.9
722,099 + AMB_RS03455 0.52 -3.3
722,099 + AMB_RS03455 0.52 +1.4
722,099 + AMB_RS03455 0.52 +0.3
722,100 - AMB_RS03455 0.52 +0.7
722,100 - AMB_RS03455 0.52 +0.8
722,100 - AMB_RS03455 0.52 +0.1
722,100 - AMB_RS03455 0.52 -1.6
722,100 - AMB_RS03455 0.52 +0.5
722,100 - AMB_RS03455 0.52 +0.0
722,354 - -1.6
722,356 - -1.2
722,356 - +0.4
722,356 - -0.6
722,388 + +0.2
722,388 + -1.4
722,388 + -0.6
722,389 - +0.3
722,389 - +0.1
722,511 + AMB_RS03460 0.14 -0.9
722,511 + AMB_RS03460 0.14 -2.4
722,511 + AMB_RS03460 0.14 -0.2
722,511 + AMB_RS03460 0.14 -1.8
722,511 + AMB_RS03460 0.14 -3.7
722,511 + AMB_RS03460 0.14 -1.2
722,511 + AMB_RS03460 0.14 -2.1
722,511 + AMB_RS03460 0.14 -0.7
722,512 - AMB_RS03460 0.14 +0.9
722,512 - AMB_RS03460 0.14 +0.0
722,512 - AMB_RS03460 0.14 -1.2
722,512 - AMB_RS03460 0.14 +0.4
722,512 - AMB_RS03460 0.14 -0.9
722,512 - AMB_RS03460 0.14 -0.2
722,512 - AMB_RS03460 0.14 -0.2
722,512 - AMB_RS03460 0.14 +0.1
722,512 - AMB_RS03460 0.14 -1.2
722,512 - AMB_RS03460 0.14 +0.5
722,556 + AMB_RS03460 0.19 -0.7
722,556 + AMB_RS03460 0.19 -0.9
722,556 + AMB_RS03460 0.19 +0.1
722,556 + AMB_RS03460 0.19 -0.1
722,646 + AMB_RS03460 0.29 +0.8
722,646 + AMB_RS03460 0.29 -0.1
722,646 + AMB_RS03460 0.29 -0.9
722,646 + AMB_RS03460 0.29 +0.0
722,646 + AMB_RS03460 0.29 +0.1
722,646 + AMB_RS03460 0.29 +0.2
722,646 + AMB_RS03460 0.29 +0.4
722,646 + AMB_RS03460 0.29 -1.3
722,647 - AMB_RS03460 0.29 -0.8
722,647 - AMB_RS03460 0.29 -0.2
722,647 - AMB_RS03460 0.29 +0.0
722,647 - AMB_RS03460 0.29 -3.4
722,647 - AMB_RS03460 0.29 -1.2
722,647 - AMB_RS03460 0.29 -1.4
722,647 - AMB_RS03460 0.29 -0.6
722,647 - AMB_RS03460 0.29 -0.6
722,647 - AMB_RS03460 0.29 -0.2
722,647 - AMB_RS03460 0.29 -0.1
722,647 - AMB_RS03460 0.29 +0.4
722,647 - AMB_RS03460 0.29 -1.4
722,647 - AMB_RS03460 0.29 +0.1
722,647 - AMB_RS03460 0.29 +0.4
722,647 - AMB_RS03460 0.29 -0.4
722,647 - AMB_RS03460 0.29 -1.2
722,647 - AMB_RS03460 0.29 -0.1
722,747 - AMB_RS03460 0.40 +0.4
722,747 - AMB_RS03460 0.40 +0.1
722,766 + AMB_RS03460 0.42 -0.6
722,766 + AMB_RS03460 0.42 +0.1
722,767 - AMB_RS03460 0.43 -0.6
722,767 - AMB_RS03460 0.43 -1.2
722,832 + AMB_RS03460 0.50 -0.2
722,832 + AMB_RS03460 0.50 +0.2
722,833 - AMB_RS03460 0.50 -1.9
722,833 - AMB_RS03460 0.50 -0.2
722,859 + AMB_RS03460 0.53 +0.0
722,859 + AMB_RS03460 0.53 +0.4
722,859 + AMB_RS03460 0.53 +0.9
722,859 + AMB_RS03460 0.53 -0.4
722,859 + AMB_RS03460 0.53 -1.6
722,859 + AMB_RS03460 0.53 -0.6
722,860 - AMB_RS03460 0.53 -1.2
722,860 - AMB_RS03460 0.53 -0.6
722,860 - AMB_RS03460 0.53 -1.8
722,860 - AMB_RS03460 0.53 -2.3
722,860 - AMB_RS03460 0.53 -2.2
723,041 - AMB_RS03460 0.73 +0.5
723,041 - AMB_RS03460 0.73 -0.6
723,041 - AMB_RS03460 0.73 +0.0
723,051 + AMB_RS03460 0.74 +0.3
723,051 + AMB_RS03460 0.74 +0.0
723,052 - AMB_RS03460 0.74 +0.2

Or see this region's nucleotide sequence