Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03090 and AMB_RS03095 are separated by 108 nucleotides AMB_RS03095 and AMB_RS03100 overlap by 4 nucleotides AMB_RS03100 and AMB_RS03105 are separated by 24 nucleotides AMB_RS03105 and AMB_RS03110 are separated by 116 nucleotides
AMB_RS03090: AMB_RS03090 - tRNA guanosine(34) transglycosylase Tgt, at 646,101 to 647,228
_RS03090
AMB_RS03095: AMB_RS03095 - tetratricopeptide repeat protein, at 647,337 to 647,840
_RS03095
AMB_RS03100: AMB_RS03100 - isoprenylcysteine carboxylmethyltransferase family protein, at 647,837 to 648,454
_RS03100
AMB_RS03105: AMB_RS03105 - hypothetical protein, at 648,479 to 648,991
_RS03105
AMB_RS03110: AMB_RS03110 - membrane protein, at 649,108 to 650,244
_RS03110
Position (kb) 647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 647.046 kb on + strand, within AMB_RS03090 at 647.213 kb on + strand at 647.508 kb on + strand, within AMB_RS03095 at 647.508 kb on + strand, within AMB_RS03095 at 647.509 kb on - strand, within AMB_RS03095 at 647.509 kb on - strand, within AMB_RS03095 at 647.514 kb on + strand, within AMB_RS03095 at 647.514 kb on + strand, within AMB_RS03095 at 647.515 kb on - strand, within AMB_RS03095 at 647.697 kb on + strand, within AMB_RS03095 at 647.697 kb on + strand, within AMB_RS03095 at 647.855 kb on + strand at 647.855 kb on + strand at 647.855 kb on + strand at 647.856 kb on - strand at 647.856 kb on - strand at 647.856 kb on - strand at 647.939 kb on + strand, within AMB_RS03100 at 647.939 kb on + strand, within AMB_RS03100 at 647.939 kb on + strand, within AMB_RS03100 at 647.939 kb on + strand, within AMB_RS03100 at 647.939 kb on + strand, within AMB_RS03100 at 647.940 kb on - strand, within AMB_RS03100 at 647.940 kb on - strand, within AMB_RS03100 at 647.940 kb on - strand, within AMB_RS03100 at 647.940 kb on - strand, within AMB_RS03100 at 647.947 kb on + strand, within AMB_RS03100 at 648.095 kb on + strand, within AMB_RS03100 at 648.095 kb on + strand, within AMB_RS03100 at 648.099 kb on - strand, within AMB_RS03100 at 648.099 kb on - strand, within AMB_RS03100 at 648.099 kb on - strand, within AMB_RS03100 at 648.206 kb on + strand, within AMB_RS03100 at 648.207 kb on - strand, within AMB_RS03100 at 648.207 kb on - strand, within AMB_RS03100 at 648.284 kb on + strand, within AMB_RS03100 at 648.285 kb on - strand, within AMB_RS03100 at 648.302 kb on + strand, within AMB_RS03100 at 648.302 kb on + strand, within AMB_RS03100 at 648.302 kb on + strand, within AMB_RS03100 at 648.303 kb on - strand, within AMB_RS03100 at 648.303 kb on - strand, within AMB_RS03100 at 648.303 kb on - strand, within AMB_RS03100 at 648.303 kb on - strand, within AMB_RS03100 at 648.462 kb on + strand at 648.463 kb on - strand at 648.463 kb on - strand at 648.732 kb on + strand, within AMB_RS03105 at 648.733 kb on - strand, within AMB_RS03105 at 648.733 kb on - strand, within AMB_RS03105 at 648.733 kb on - strand, within AMB_RS03105 at 648.733 kb on - strand, within AMB_RS03105 at 648.852 kb on + strand, within AMB_RS03105 at 648.852 kb on + strand, within AMB_RS03105 at 648.904 kb on - strand, within AMB_RS03105 at 649.023 kb on + strand at 649.024 kb on - strand at 649.024 kb on - strand at 649.024 kb on - strand at 649.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 647,046 + AMB_RS03090 0.84 -1.4 647,213 + +0.4 647,508 + AMB_RS03095 0.34 -0.1 647,508 + AMB_RS03095 0.34 +0.5 647,509 - AMB_RS03095 0.34 +0.1 647,509 - AMB_RS03095 0.34 +0.4 647,514 + AMB_RS03095 0.35 +0.3 647,514 + AMB_RS03095 0.35 -3.4 647,515 - AMB_RS03095 0.35 -0.5 647,697 + AMB_RS03095 0.71 -1.6 647,697 + AMB_RS03095 0.71 +0.4 647,855 + +1.1 647,855 + -2.6 647,855 + +0.7 647,856 - +0.0 647,856 - +1.4 647,856 - +0.3 647,939 + AMB_RS03100 0.17 -1.2 647,939 + AMB_RS03100 0.17 -1.9 647,939 + AMB_RS03100 0.17 -1.2 647,939 + AMB_RS03100 0.17 -0.3 647,939 + AMB_RS03100 0.17 -0.6 647,940 - AMB_RS03100 0.17 -2.3 647,940 - AMB_RS03100 0.17 -1.2 647,940 - AMB_RS03100 0.17 +0.1 647,940 - AMB_RS03100 0.17 -1.1 647,947 + AMB_RS03100 0.18 -1.2 648,095 + AMB_RS03100 0.42 -1.8 648,095 + AMB_RS03100 0.42 -1.8 648,099 - AMB_RS03100 0.42 +0.2 648,099 - AMB_RS03100 0.42 -0.2 648,099 - AMB_RS03100 0.42 +0.3 648,206 + AMB_RS03100 0.60 +0.0 648,207 - AMB_RS03100 0.60 +0.6 648,207 - AMB_RS03100 0.60 -0.9 648,284 + AMB_RS03100 0.72 -1.9 648,285 - AMB_RS03100 0.72 -2.3 648,302 + AMB_RS03100 0.75 +0.1 648,302 + AMB_RS03100 0.75 -0.4 648,302 + AMB_RS03100 0.75 -0.0 648,303 - AMB_RS03100 0.75 -1.9 648,303 - AMB_RS03100 0.75 -1.5 648,303 - AMB_RS03100 0.75 -2.9 648,303 - AMB_RS03100 0.75 -1.7 648,462 + +0.4 648,463 - -0.6 648,463 - -1.2 648,732 + AMB_RS03105 0.49 -2.8 648,733 - AMB_RS03105 0.50 +0.4 648,733 - AMB_RS03105 0.50 +0.4 648,733 - AMB_RS03105 0.50 -2.4 648,733 - AMB_RS03105 0.50 +0.4 648,852 + AMB_RS03105 0.73 -3.1 648,852 + AMB_RS03105 0.73 -0.0 648,904 - AMB_RS03105 0.83 -0.2 649,023 + -2.2 649,024 - +0.1 649,024 - +1.4 649,024 - -0.8 649,027 - +0.7
Or see this region's nucleotide sequence