Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02575 and AMB_RS02580 are separated by 12 nucleotides AMB_RS02580 and AMB_RS02585 are separated by 3 nucleotides AMB_RS02585 and AMB_RS02590 are separated by 12 nucleotides
AMB_RS02575: AMB_RS02575 - flagellar motor switch protein FliN, at 535,084 to 535,410
_RS02575
AMB_RS02580: AMB_RS02580 - flagellar assembly protein H, at 535,423 to 536,100
_RS02580
AMB_RS02585: AMB_RS02585 - flagellar motor switch protein FliG, at 536,104 to 537,123
_RS02585
AMB_RS02590: AMB_RS02590 - flagellar M-ring protein FliF, at 537,136 to 538,797
_RS02590
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 535.181 kb on + strand, within AMB_RS02575 at 535.181 kb on + strand, within AMB_RS02575 at 535.181 kb on + strand, within AMB_RS02575 at 535.181 kb on + strand, within AMB_RS02575 at 535.181 kb on + strand, within AMB_RS02575 at 535.307 kb on + strand, within AMB_RS02575 at 535.307 kb on + strand, within AMB_RS02575 at 535.308 kb on - strand, within AMB_RS02575 at 535.424 kb on + strand at 535.665 kb on + strand, within AMB_RS02580 at 535.666 kb on - strand, within AMB_RS02580 at 535.690 kb on + strand, within AMB_RS02580 at 535.690 kb on + strand, within AMB_RS02580 at 535.690 kb on + strand, within AMB_RS02580 at 535.690 kb on + strand, within AMB_RS02580 at 535.690 kb on + strand, within AMB_RS02580 at 535.931 kb on + strand, within AMB_RS02580 at 535.931 kb on + strand, within AMB_RS02580 at 535.932 kb on - strand, within AMB_RS02580 at 536.084 kb on + strand at 536.084 kb on + strand at 536.085 kb on - strand at 536.085 kb on - strand at 536.085 kb on - strand at 536.085 kb on - strand at 536.093 kb on + strand at 536.094 kb on - strand at 536.105 kb on + strand at 536.105 kb on + strand at 536.106 kb on - strand at 536.108 kb on + strand at 536.108 kb on + strand at 536.108 kb on + strand at 536.109 kb on - strand at 536.747 kb on + strand, within AMB_RS02585 at 536.748 kb on - strand, within AMB_RS02585 at 536.748 kb on - strand, within AMB_RS02585 at 536.748 kb on - strand, within AMB_RS02585 at 536.748 kb on - strand, within AMB_RS02585 at 536.797 kb on - strand, within AMB_RS02585 at 537.101 kb on + strand at 537.102 kb on - strand at 537.563 kb on + strand, within AMB_RS02590 at 537.563 kb on + strand, within AMB_RS02590 at 537.563 kb on + strand, within AMB_RS02590 at 537.563 kb on + strand, within AMB_RS02590 at 537.564 kb on - strand, within AMB_RS02590 at 537.564 kb on - strand, within AMB_RS02590 at 537.564 kb on - strand, within AMB_RS02590 at 537.564 kb on - strand, within AMB_RS02590 at 537.564 kb on - strand, within AMB_RS02590 at 537.795 kb on - strand, within AMB_RS02590 at 537.795 kb on - strand, within AMB_RS02590
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 535,181 + AMB_RS02575 0.30 -0.6 535,181 + AMB_RS02575 0.30 -2.6 535,181 + AMB_RS02575 0.30 -2.3 535,181 + AMB_RS02575 0.30 -0.5 535,181 + AMB_RS02575 0.30 -0.2 535,307 + AMB_RS02575 0.68 +0.8 535,307 + AMB_RS02575 0.68 -2.4 535,308 - AMB_RS02575 0.69 -0.0 535,424 + -0.9 535,665 + AMB_RS02580 0.36 +0.4 535,666 - AMB_RS02580 0.36 +0.2 535,690 + AMB_RS02580 0.39 -0.4 535,690 + AMB_RS02580 0.39 -0.2 535,690 + AMB_RS02580 0.39 -0.4 535,690 + AMB_RS02580 0.39 +0.8 535,690 + AMB_RS02580 0.39 -0.2 535,931 + AMB_RS02580 0.75 -1.4 535,931 + AMB_RS02580 0.75 +0.2 535,932 - AMB_RS02580 0.75 -1.9 536,084 + +0.9 536,084 + +0.2 536,085 - -1.8 536,085 - -1.6 536,085 - -2.9 536,085 - +0.3 536,093 + -0.6 536,094 - +0.4 536,105 + +0.6 536,105 + -0.3 536,106 - -0.0 536,108 + -2.5 536,108 + +0.6 536,108 + +0.3 536,109 - -0.1 536,747 + AMB_RS02585 0.63 +0.6 536,748 - AMB_RS02585 0.63 -0.0 536,748 - AMB_RS02585 0.63 -0.3 536,748 - AMB_RS02585 0.63 -0.0 536,748 - AMB_RS02585 0.63 -1.8 536,797 - AMB_RS02585 0.68 +0.4 537,101 + -1.9 537,102 - -0.3 537,563 + AMB_RS02590 0.26 +1.0 537,563 + AMB_RS02590 0.26 +0.4 537,563 + AMB_RS02590 0.26 -0.6 537,563 + AMB_RS02590 0.26 +0.2 537,564 - AMB_RS02590 0.26 -0.2 537,564 - AMB_RS02590 0.26 -0.3 537,564 - AMB_RS02590 0.26 +1.5 537,564 - AMB_RS02590 0.26 -0.3 537,564 - AMB_RS02590 0.26 -1.8 537,795 - AMB_RS02590 0.40 -2.4 537,795 - AMB_RS02590 0.40 -0.2
Or see this region's nucleotide sequence