Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02150

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02145 and AMB_RS02150 overlap by 4 nucleotidesAMB_RS02150 and AMB_RS02155 are separated by 73 nucleotidesAMB_RS02155 and AMB_RS02160 are separated by 181 nucleotidesAMB_RS02160 and AMB_RS02165 are separated by 148 nucleotides AMB_RS02145: AMB_RS02145 - hypothetical protein, at 451,732 to 453,048 _RS02145 AMB_RS02150: AMB_RS02150 - hypothetical protein, at 453,045 to 454,085 _RS02150 AMB_RS02155: AMB_RS02155 - hypothetical protein, at 454,159 to 454,458 _RS02155 AMB_RS02160: AMB_RS02160 - tRNA-Ser, at 454,640 to 454,732 _RS02160 AMB_RS02165: AMB_RS02165 - hypothetical protein, at 454,881 to 455,144 _RS02165 Position (kb) 453 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1at 452.108 kb on + strand, within AMB_RS02145at 452.109 kb on - strand, within AMB_RS02145at 452.109 kb on - strand, within AMB_RS02145at 452.109 kb on - strand, within AMB_RS02145at 452.474 kb on + strand, within AMB_RS02145at 452.474 kb on + strand, within AMB_RS02145at 452.475 kb on - strand, within AMB_RS02145at 452.475 kb on - strand, within AMB_RS02145at 452.637 kb on + strand, within AMB_RS02145at 452.637 kb on + strand, within AMB_RS02145at 452.637 kb on + strand, within AMB_RS02145at 452.637 kb on + strand, within AMB_RS02145at 452.725 kb on + strand, within AMB_RS02145at 452.725 kb on + strand, within AMB_RS02145at 452.725 kb on + strand, within AMB_RS02145at 452.725 kb on + strand, within AMB_RS02145at 452.725 kb on + strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.726 kb on - strand, within AMB_RS02145at 452.858 kb on + strand, within AMB_RS02145at 452.859 kb on - strand, within AMB_RS02145at 452.859 kb on - strand, within AMB_RS02145at 453.099 kb on + strandat 453.201 kb on + strand, within AMB_RS02150at 453.201 kb on + strand, within AMB_RS02150at 453.561 kb on + strand, within AMB_RS02150at 453.562 kb on - strand, within AMB_RS02150at 453.870 kb on + strand, within AMB_RS02150at 453.870 kb on + strand, within AMB_RS02150at 453.870 kb on + strand, within AMB_RS02150at 453.870 kb on + strand, within AMB_RS02150at 453.870 kb on + strand, within AMB_RS02150at 453.871 kb on - strand, within AMB_RS02150at 453.871 kb on - strand, within AMB_RS02150at 453.871 kb on - strand, within AMB_RS02150at 453.871 kb on - strand, within AMB_RS02150at 453.871 kb on - strand, within AMB_RS02150at 453.888 kb on - strand, within AMB_RS02150at 453.888 kb on - strand, within AMB_RS02150at 453.902 kb on - strand, within AMB_RS02150at 453.915 kb on + strand, within AMB_RS02150at 453.916 kb on - strand, within AMB_RS02150at 453.916 kb on - strand, within AMB_RS02150at 454.086 kb on - strandat 454.086 kb on - strandat 454.092 kb on + strandat 454.092 kb on + strandat 454.092 kb on + strandat 454.092 kb on + strandat 454.092 kb on + strandat 454.092 kb on + strandat 454.093 kb on - strandat 454.093 kb on - strandat 454.093 kb on - strandat 454.093 kb on - strandat 454.093 kb on - strandat 454.093 kb on - strandat 454.093 kb on - strandat 454.093 kb on - strandat 454.097 kb on + strandat 454.097 kb on + strandat 454.097 kb on + strandat 454.097 kb on + strandat 454.097 kb on + strandat 454.097 kb on + strandat 454.097 kb on + strandat 454.097 kb on + strandat 454.097 kb on + strandat 454.098 kb on - strandat 454.098 kb on - strandat 454.098 kb on - strandat 454.098 kb on - strandat 454.098 kb on - strandat 454.102 kb on + strandat 454.103 kb on - strandat 454.103 kb on - strandat 454.133 kb on + strandat 454.133 kb on + strandat 454.134 kb on - strandat 454.460 kb on + strandat 454.461 kb on - strandat 454.476 kb on - strandat 454.485 kb on - strandat 454.499 kb on + strandat 454.521 kb on - strandat 454.915 kb on + strand, within AMB_RS02165at 454.916 kb on - strand, within AMB_RS02165at 454.916 kb on - strand, within AMB_RS02165at 454.916 kb on - strand, within AMB_RS02165at 454.916 kb on - strand, within AMB_RS02165at 455.026 kb on + strand, within AMB_RS02165at 455.026 kb on + strand, within AMB_RS02165at 455.026 kb on + strand, within AMB_RS02165at 455.026 kb on + strand, within AMB_RS02165at 455.026 kb on + strand, within AMB_RS02165at 455.027 kb on - strand, within AMB_RS02165at 455.027 kb on - strand, within AMB_RS02165

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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452,108 + AMB_RS02145 0.29 -0.3
452,109 - AMB_RS02145 0.29 -2.1
452,109 - AMB_RS02145 0.29 +0.1
452,109 - AMB_RS02145 0.29 +0.1
452,474 + AMB_RS02145 0.56 -1.4
452,474 + AMB_RS02145 0.56 -0.3
452,475 - AMB_RS02145 0.56 +0.1
452,475 - AMB_RS02145 0.56 +0.3
452,637 + AMB_RS02145 0.69 -0.2
452,637 + AMB_RS02145 0.69 -0.1
452,637 + AMB_RS02145 0.69 +0.3
452,637 + AMB_RS02145 0.69 -2.1
452,725 + AMB_RS02145 0.75 -0.6
452,725 + AMB_RS02145 0.75 -1.2
452,725 + AMB_RS02145 0.75 -0.1
452,725 + AMB_RS02145 0.75 -0.7
452,725 + AMB_RS02145 0.75 -0.1
452,726 - AMB_RS02145 0.75 -0.6
452,726 - AMB_RS02145 0.75 +0.2
452,726 - AMB_RS02145 0.75 +1.4
452,726 - AMB_RS02145 0.75 -0.1
452,726 - AMB_RS02145 0.75 +0.5
452,726 - AMB_RS02145 0.75 -0.6
452,858 + AMB_RS02145 0.85 +0.2
452,859 - AMB_RS02145 0.86 +0.4
452,859 - AMB_RS02145 0.86 -2.3
453,099 + -0.2
453,201 + AMB_RS02150 0.15 -1.4
453,201 + AMB_RS02150 0.15 -1.6
453,561 + AMB_RS02150 0.50 +1.4
453,562 - AMB_RS02150 0.50 +0.3
453,870 + AMB_RS02150 0.79 -0.1
453,870 + AMB_RS02150 0.79 +1.4
453,870 + AMB_RS02150 0.79 -0.2
453,870 + AMB_RS02150 0.79 +0.3
453,870 + AMB_RS02150 0.79 -0.4
453,871 - AMB_RS02150 0.79 +0.6
453,871 - AMB_RS02150 0.79 +0.6
453,871 - AMB_RS02150 0.79 -0.4
453,871 - AMB_RS02150 0.79 -0.6
453,871 - AMB_RS02150 0.79 +1.0
453,888 - AMB_RS02150 0.81 -1.9
453,888 - AMB_RS02150 0.81 +0.4
453,902 - AMB_RS02150 0.82 +0.8
453,915 + AMB_RS02150 0.84 -0.4
453,916 - AMB_RS02150 0.84 -0.9
453,916 - AMB_RS02150 0.84 -0.1
454,086 - +0.4
454,086 - -0.9
454,092 + +0.6
454,092 + +0.4
454,092 + +0.6
454,092 + +0.8
454,092 + +0.2
454,092 + +0.4
454,093 - -0.1
454,093 - -0.6
454,093 - -0.1
454,093 - -0.3
454,093 - -0.9
454,093 - -0.9
454,093 - -0.6
454,093 - +0.4
454,097 + -0.8
454,097 + +0.3
454,097 + -0.2
454,097 + -0.1
454,097 + +1.1
454,097 + +0.4
454,097 + -0.3
454,097 + -0.6
454,097 + -0.9
454,098 - -0.1
454,098 - -0.0
454,098 - -0.5
454,098 - -0.9
454,098 - +0.1
454,102 + +0.2
454,103 - -0.1
454,103 - -0.7
454,133 + -2.1
454,133 + +0.4
454,134 - -1.0
454,460 + +0.5
454,461 - +0.4
454,476 - +1.4
454,485 - +0.1
454,499 + -1.6
454,521 - +1.1
454,915 + AMB_RS02165 0.13 +0.1
454,916 - AMB_RS02165 0.13 +0.4
454,916 - AMB_RS02165 0.13 -1.0
454,916 - AMB_RS02165 0.13 -0.2
454,916 - AMB_RS02165 0.13 -1.6
455,026 + AMB_RS02165 0.55 +1.4
455,026 + AMB_RS02165 0.55 -1.6
455,026 + AMB_RS02165 0.55 -2.5
455,026 + AMB_RS02165 0.55 +0.1
455,026 + AMB_RS02165 0.55 -0.3
455,027 - AMB_RS02165 0.55 -0.2
455,027 - AMB_RS02165 0.55 -2.8

Or see this region's nucleotide sequence