Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01810

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01800 and AMB_RS01805 overlap by 4 nucleotidesAMB_RS01805 and AMB_RS01810 overlap by 7 nucleotidesAMB_RS01810 and AMB_RS01815 overlap by 4 nucleotidesAMB_RS01815 and AMB_RS01820 overlap by 1 nucleotides AMB_RS01800: AMB_RS01800 - hypothetical protein, at 388,712 to 389,089 _RS01800 AMB_RS01805: AMB_RS01805 - hypothetical protein, at 389,086 to 390,015 _RS01805 AMB_RS01810: AMB_RS01810 - DNA helicase, at 390,009 to 391,580 _RS01810 AMB_RS01815: AMB_RS01815 - hypothetical protein, at 391,577 to 391,933 _RS01815 AMB_RS01820: AMB_RS01820 - DUF3987 domain-containing protein, at 391,933 to 394,206 _RS01820 Position (kb) 390 391 392Strain fitness (log2 ratio) -3 -2 -1 0 1at 389.015 kb on + strand, within AMB_RS01800at 389.016 kb on - strand, within AMB_RS01800at 389.085 kb on + strandat 389.085 kb on + strandat 389.086 kb on - strandat 389.086 kb on - strandat 389.086 kb on - strandat 389.110 kb on - strandat 389.131 kb on + strandat 389.132 kb on - strandat 389.132 kb on - strandat 389.132 kb on - strandat 389.140 kb on + strandat 389.140 kb on + strandat 389.140 kb on + strandat 389.140 kb on + strandat 389.141 kb on - strandat 389.141 kb on - strandat 389.141 kb on - strandat 389.433 kb on - strand, within AMB_RS01805at 389.433 kb on - strand, within AMB_RS01805at 389.557 kb on + strand, within AMB_RS01805at 389.557 kb on + strand, within AMB_RS01805at 389.558 kb on - strand, within AMB_RS01805at 389.558 kb on - strand, within AMB_RS01805at 389.590 kb on + strand, within AMB_RS01805at 389.590 kb on + strand, within AMB_RS01805at 389.590 kb on + strand, within AMB_RS01805at 389.590 kb on + strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.591 kb on - strand, within AMB_RS01805at 389.624 kb on - strand, within AMB_RS01805at 389.624 kb on - strand, within AMB_RS01805at 389.908 kb on + strand, within AMB_RS01805at 389.908 kb on + strand, within AMB_RS01805at 389.909 kb on - strand, within AMB_RS01805at 389.909 kb on - strand, within AMB_RS01805at 389.909 kb on - strand, within AMB_RS01805at 389.909 kb on - strand, within AMB_RS01805at 389.909 kb on - strand, within AMB_RS01805at 390.055 kb on - strandat 390.055 kb on - strandat 390.061 kb on - strandat 390.216 kb on + strand, within AMB_RS01810at 390.216 kb on + strand, within AMB_RS01810at 390.217 kb on - strand, within AMB_RS01810at 390.217 kb on - strand, within AMB_RS01810at 390.217 kb on - strand, within AMB_RS01810at 390.217 kb on - strand, within AMB_RS01810at 390.261 kb on + strand, within AMB_RS01810at 390.261 kb on + strand, within AMB_RS01810at 390.262 kb on - strand, within AMB_RS01810at 390.262 kb on - strand, within AMB_RS01810at 390.262 kb on - strand, within AMB_RS01810at 390.339 kb on + strand, within AMB_RS01810at 390.339 kb on + strand, within AMB_RS01810at 390.339 kb on + strand, within AMB_RS01810at 390.340 kb on - strand, within AMB_RS01810at 390.340 kb on - strand, within AMB_RS01810at 390.340 kb on - strand, within AMB_RS01810at 390.340 kb on - strand, within AMB_RS01810at 390.340 kb on - strand, within AMB_RS01810at 390.412 kb on - strand, within AMB_RS01810at 390.470 kb on + strand, within AMB_RS01810at 390.730 kb on - strand, within AMB_RS01810at 390.830 kb on + strand, within AMB_RS01810at 390.831 kb on - strand, within AMB_RS01810at 390.831 kb on - strand, within AMB_RS01810at 390.993 kb on + strand, within AMB_RS01810at 390.993 kb on + strand, within AMB_RS01810at 390.993 kb on + strand, within AMB_RS01810at 390.993 kb on + strand, within AMB_RS01810at 390.994 kb on - strand, within AMB_RS01810at 390.994 kb on - strand, within AMB_RS01810at 390.994 kb on - strand, within AMB_RS01810at 391.099 kb on + strand, within AMB_RS01810at 391.167 kb on - strand, within AMB_RS01810at 391.167 kb on - strand, within AMB_RS01810at 391.309 kb on - strand, within AMB_RS01810at 391.344 kb on - strand, within AMB_RS01810at 391.357 kb on - strand, within AMB_RS01810at 391.411 kb on - strand, within AMB_RS01810at 391.411 kb on - strand, within AMB_RS01810at 391.622 kb on - strand, within AMB_RS01815at 391.773 kb on - strand, within AMB_RS01815at 391.857 kb on - strand, within AMB_RS01815at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.395 kb on + strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.396 kb on - strand, within AMB_RS01820at 392.448 kb on - strand, within AMB_RS01820

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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389,015 + AMB_RS01800 0.80 -0.4
389,016 - AMB_RS01800 0.80 -2.2
389,085 + -3.2
389,085 + -1.4
389,086 - -1.2
389,086 - +0.0
389,086 - -0.2
389,110 - -2.6
389,131 + +0.6
389,132 - -0.6
389,132 - -0.2
389,132 - -1.2
389,140 + -2.1
389,140 + -0.9
389,140 + -1.4
389,140 + -1.6
389,141 - -1.4
389,141 - -0.6
389,141 - -0.2
389,433 - AMB_RS01805 0.37 +0.1
389,433 - AMB_RS01805 0.37 +0.4
389,557 + AMB_RS01805 0.51 +0.6
389,557 + AMB_RS01805 0.51 -2.4
389,558 - AMB_RS01805 0.51 -1.6
389,558 - AMB_RS01805 0.51 -0.8
389,590 + AMB_RS01805 0.54 -2.3
389,590 + AMB_RS01805 0.54 -2.4
389,590 + AMB_RS01805 0.54 +0.3
389,590 + AMB_RS01805 0.54 -0.5
389,591 - AMB_RS01805 0.54 +0.1
389,591 - AMB_RS01805 0.54 -1.7
389,591 - AMB_RS01805 0.54 -1.2
389,591 - AMB_RS01805 0.54 -0.9
389,591 - AMB_RS01805 0.54 +0.2
389,591 - AMB_RS01805 0.54 -2.1
389,591 - AMB_RS01805 0.54 -0.1
389,591 - AMB_RS01805 0.54 -2.6
389,591 - AMB_RS01805 0.54 -1.4
389,591 - AMB_RS01805 0.54 -0.2
389,591 - AMB_RS01805 0.54 -1.2
389,624 - AMB_RS01805 0.58 +0.7
389,624 - AMB_RS01805 0.58 -3.6
389,908 + AMB_RS01805 0.88 -1.1
389,908 + AMB_RS01805 0.88 -0.9
389,909 - AMB_RS01805 0.88 +0.1
389,909 - AMB_RS01805 0.88 -0.4
389,909 - AMB_RS01805 0.88 -1.8
389,909 - AMB_RS01805 0.88 -0.6
389,909 - AMB_RS01805 0.88 +1.4
390,055 - -3.0
390,055 - -0.2
390,061 - +0.1
390,216 + AMB_RS01810 0.13 -0.6
390,216 + AMB_RS01810 0.13 -2.4
390,217 - AMB_RS01810 0.13 -0.6
390,217 - AMB_RS01810 0.13 +0.4
390,217 - AMB_RS01810 0.13 -0.2
390,217 - AMB_RS01810 0.13 -1.2
390,261 + AMB_RS01810 0.16 -1.2
390,261 + AMB_RS01810 0.16 +0.1
390,262 - AMB_RS01810 0.16 -0.1
390,262 - AMB_RS01810 0.16 -0.6
390,262 - AMB_RS01810 0.16 -0.9
390,339 + AMB_RS01810 0.21 +0.4
390,339 + AMB_RS01810 0.21 +0.4
390,339 + AMB_RS01810 0.21 +0.6
390,340 - AMB_RS01810 0.21 -1.6
390,340 - AMB_RS01810 0.21 +0.2
390,340 - AMB_RS01810 0.21 +0.4
390,340 - AMB_RS01810 0.21 -0.0
390,340 - AMB_RS01810 0.21 +0.2
390,412 - AMB_RS01810 0.26 -0.0
390,470 + AMB_RS01810 0.29 -1.9
390,730 - AMB_RS01810 0.46 -0.9
390,830 + AMB_RS01810 0.52 -1.6
390,831 - AMB_RS01810 0.52 -2.3
390,831 - AMB_RS01810 0.52 -0.0
390,993 + AMB_RS01810 0.63 -0.9
390,993 + AMB_RS01810 0.63 +0.0
390,993 + AMB_RS01810 0.63 -0.4
390,993 + AMB_RS01810 0.63 -2.1
390,994 - AMB_RS01810 0.63 -0.6
390,994 - AMB_RS01810 0.63 -2.4
390,994 - AMB_RS01810 0.63 -1.0
391,099 + AMB_RS01810 0.69 -0.4
391,167 - AMB_RS01810 0.74 -0.8
391,167 - AMB_RS01810 0.74 -0.1
391,309 - AMB_RS01810 0.83 -0.2
391,344 - AMB_RS01810 0.85 -2.3
391,357 - AMB_RS01810 0.86 +0.9
391,411 - AMB_RS01810 0.89 -2.8
391,411 - AMB_RS01810 0.89 -1.9
391,622 - AMB_RS01815 0.13 -0.2
391,773 - AMB_RS01815 0.55 -2.0
391,857 - AMB_RS01815 0.78 -0.8
392,395 + AMB_RS01820 0.20 -1.2
392,395 + AMB_RS01820 0.20 +0.4
392,395 + AMB_RS01820 0.20 -3.3
392,395 + AMB_RS01820 0.20 -1.6
392,395 + AMB_RS01820 0.20 -1.6
392,395 + AMB_RS01820 0.20 +1.4
392,395 + AMB_RS01820 0.20 -1.8
392,396 - AMB_RS01820 0.20 +0.1
392,396 - AMB_RS01820 0.20 -0.2
392,396 - AMB_RS01820 0.20 +0.4
392,396 - AMB_RS01820 0.20 -0.6
392,396 - AMB_RS01820 0.20 -2.5
392,396 - AMB_RS01820 0.20 +0.8
392,448 - AMB_RS01820 0.23 -0.2

Or see this region's nucleotide sequence