Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01775

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01760 and AMB_RS23100 are separated by 17 nucleotidesAMB_RS23100 and AMB_RS01770 overlap by 1 nucleotidesAMB_RS01770 and AMB_RS01775 overlap by 1 nucleotidesAMB_RS01775 and AMB_RS01780 are separated by 291 nucleotidesAMB_RS01780 and AMB_RS01785 are separated by 29 nucleotides AMB_RS01760: AMB_RS01760 - hypothetical protein, at 384,105 to 384,362 _RS01760 AMB_RS23100: AMB_RS23100 - hypothetical protein, at 384,380 to 385,057 _RS23100 AMB_RS01770: AMB_RS01770 - XRE family transcriptional regulator, at 385,057 to 385,338 _RS01770 AMB_RS01775: AMB_RS01775 - hypothetical protein, at 385,338 to 386,096 _RS01775 AMB_RS01780: AMB_RS01780 - sigma-70 family RNA polymerase sigma factor, at 386,388 to 386,951 _RS01780 AMB_RS01785: AMB_RS01785 - hypothetical protein, at 386,981 to 387,376 _RS01785 Position (kb) 385 386 387Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 384.345 kb on + strandat 384.381 kb on + strandat 384.381 kb on + strandat 384.381 kb on + strandat 384.381 kb on + strandat 384.382 kb on - strandat 384.382 kb on - strandat 384.541 kb on + strand, within AMB_RS23100at 384.541 kb on + strand, within AMB_RS23100at 384.541 kb on + strand, within AMB_RS23100at 384.542 kb on - strand, within AMB_RS23100at 384.542 kb on - strand, within AMB_RS23100at 384.579 kb on + strand, within AMB_RS23100at 384.580 kb on - strand, within AMB_RS23100at 384.580 kb on - strand, within AMB_RS23100at 384.634 kb on + strand, within AMB_RS23100at 384.635 kb on - strand, within AMB_RS23100at 384.635 kb on - strand, within AMB_RS23100at 384.655 kb on + strand, within AMB_RS23100at 384.655 kb on + strand, within AMB_RS23100at 384.656 kb on - strand, within AMB_RS23100at 384.656 kb on - strand, within AMB_RS23100at 384.754 kb on - strand, within AMB_RS23100at 384.754 kb on - strand, within AMB_RS23100at 384.754 kb on - strand, within AMB_RS23100at 384.806 kb on - strand, within AMB_RS23100at 384.828 kb on + strand, within AMB_RS23100at 384.829 kb on - strand, within AMB_RS23100at 384.903 kb on + strand, within AMB_RS23100at 384.903 kb on + strand, within AMB_RS23100at 384.903 kb on + strand, within AMB_RS23100at 385.029 kb on + strandat 385.029 kb on + strandat 385.029 kb on + strandat 385.029 kb on + strandat 385.029 kb on + strandat 385.030 kb on - strandat 385.030 kb on - strandat 385.030 kb on - strandat 385.030 kb on - strandat 385.030 kb on - strandat 385.030 kb on - strandat 385.247 kb on + strand, within AMB_RS01770at 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.322 kb on + strandat 385.323 kb on - strandat 385.323 kb on - strandat 385.323 kb on - strandat 385.323 kb on - strandat 385.323 kb on - strandat 385.323 kb on - strandat 385.369 kb on + strandat 385.370 kb on - strandat 385.370 kb on - strandat 385.624 kb on + strand, within AMB_RS01775at 385.624 kb on + strand, within AMB_RS01775at 385.624 kb on + strand, within AMB_RS01775at 385.624 kb on + strand, within AMB_RS01775at 385.624 kb on + strand, within AMB_RS01775at 385.624 kb on + strand, within AMB_RS01775at 385.725 kb on + strand, within AMB_RS01775at 385.725 kb on + strand, within AMB_RS01775at 385.807 kb on + strand, within AMB_RS01775at 385.807 kb on + strand, within AMB_RS01775at 385.807 kb on + strand, within AMB_RS01775at 385.807 kb on + strand, within AMB_RS01775at 385.807 kb on + strand, within AMB_RS01775at 385.807 kb on + strand, within AMB_RS01775at 385.808 kb on - strand, within AMB_RS01775at 385.808 kb on - strand, within AMB_RS01775at 385.808 kb on - strand, within AMB_RS01775at 385.808 kb on - strand, within AMB_RS01775at 385.808 kb on - strand, within AMB_RS01775at 385.835 kb on - strand, within AMB_RS01775at 385.913 kb on + strand, within AMB_RS01775at 385.914 kb on - strand, within AMB_RS01775at 386.234 kb on + strandat 386.493 kb on - strand, within AMB_RS01780at 386.579 kb on + strand, within AMB_RS01780at 386.580 kb on - strand, within AMB_RS01780at 386.580 kb on - strand, within AMB_RS01780at 386.580 kb on - strand, within AMB_RS01780at 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 387.044 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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384,345 + +0.3
384,381 + -2.1
384,381 + +0.3
384,381 + +0.4
384,381 + -0.5
384,382 - -0.6
384,382 - -3.1
384,541 + AMB_RS23100 0.24 +1.4
384,541 + AMB_RS23100 0.24 -0.2
384,541 + AMB_RS23100 0.24 +0.6
384,542 - AMB_RS23100 0.24 +1.8
384,542 - AMB_RS23100 0.24 -0.6
384,579 + AMB_RS23100 0.29 -0.9
384,580 - AMB_RS23100 0.29 +0.1
384,580 - AMB_RS23100 0.29 -1.2
384,634 + AMB_RS23100 0.37 -0.9
384,635 - AMB_RS23100 0.38 +1.4
384,635 - AMB_RS23100 0.38 -1.2
384,655 + AMB_RS23100 0.41 -0.1
384,655 + AMB_RS23100 0.41 +0.6
384,656 - AMB_RS23100 0.41 -0.3
384,656 - AMB_RS23100 0.41 -2.7
384,754 - AMB_RS23100 0.55 -0.9
384,754 - AMB_RS23100 0.55 -0.8
384,754 - AMB_RS23100 0.55 -1.8
384,806 - AMB_RS23100 0.63 -0.9
384,828 + AMB_RS23100 0.66 -0.5
384,829 - AMB_RS23100 0.66 -1.2
384,903 + AMB_RS23100 0.77 -1.0
384,903 + AMB_RS23100 0.77 +1.4
384,903 + AMB_RS23100 0.77 -1.6
385,029 + -1.2
385,029 + -0.9
385,029 + +0.4
385,029 + -0.1
385,029 + +0.1
385,030 - -0.1
385,030 - -1.6
385,030 - -0.3
385,030 - +1.4
385,030 - -1.6
385,030 - +0.6
385,247 + AMB_RS01770 0.67 -0.1
385,322 + +0.5
385,322 + +0.3
385,322 + +0.1
385,322 + -2.1
385,322 + -1.2
385,322 + -0.6
385,322 + -0.2
385,322 + -1.2
385,322 + -0.3
385,323 - -0.2
385,323 - +0.1
385,323 - -1.6
385,323 - +0.4
385,323 - -1.9
385,323 - -0.4
385,369 + -3.1
385,370 - -1.9
385,370 - +0.2
385,624 + AMB_RS01775 0.38 +0.2
385,624 + AMB_RS01775 0.38 -0.2
385,624 + AMB_RS01775 0.38 -1.4
385,624 + AMB_RS01775 0.38 -1.2
385,624 + AMB_RS01775 0.38 -1.4
385,624 + AMB_RS01775 0.38 -3.0
385,725 + AMB_RS01775 0.51 -1.8
385,725 + AMB_RS01775 0.51 -1.4
385,807 + AMB_RS01775 0.62 +0.1
385,807 + AMB_RS01775 0.62 -0.6
385,807 + AMB_RS01775 0.62 -1.9
385,807 + AMB_RS01775 0.62 -1.4
385,807 + AMB_RS01775 0.62 -0.0
385,807 + AMB_RS01775 0.62 +0.4
385,808 - AMB_RS01775 0.62 -0.8
385,808 - AMB_RS01775 0.62 +1.4
385,808 - AMB_RS01775 0.62 +0.1
385,808 - AMB_RS01775 0.62 -0.3
385,808 - AMB_RS01775 0.62 -0.7
385,835 - AMB_RS01775 0.65 -3.2
385,913 + AMB_RS01775 0.76 +0.4
385,914 - AMB_RS01775 0.76 -0.2
386,234 + +0.8
386,493 - AMB_RS01780 0.19 -0.9
386,579 + AMB_RS01780 0.34 -0.0
386,580 - AMB_RS01780 0.34 +0.3
386,580 - AMB_RS01780 0.34 -0.4
386,580 - AMB_RS01780 0.34 -0.2
386,946 - -1.2
386,946 - -0.1
386,946 - -0.7
386,946 - -0.9
386,946 - -1.4
386,946 - -1.4
387,044 - AMB_RS01785 0.16 -1.4
387,090 - AMB_RS01785 0.28 +1.3
387,090 - AMB_RS01785 0.28 -0.6
387,090 - AMB_RS01785 0.28 +0.2
387,090 - AMB_RS01785 0.28 -2.6
387,090 - AMB_RS01785 0.28 +0.6

Or see this region's nucleotide sequence