Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01070

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01065 and AMB_RS01070 are separated by 151 nucleotidesAMB_RS01070 and AMB_RS01075 are separated by 259 nucleotides AMB_RS01065: AMB_RS01065 - formate hydrogenlyase, at 235,194 to 236,141 _RS01065 AMB_RS01070: AMB_RS01070 - hydrogenase 4 subunit B, at 236,293 to 238,302 _RS01070 AMB_RS01075: AMB_RS01075 - phosphoribosylamine--glycine ligase, at 238,562 to 239,836 _RS01075 Position (kb) 236 237 238 239Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 235.933 kb on + strand, within AMB_RS01065at 235.934 kb on - strand, within AMB_RS01065at 235.934 kb on - strand, within AMB_RS01065at 235.999 kb on + strand, within AMB_RS01065at 235.999 kb on + strand, within AMB_RS01065at 235.999 kb on + strand, within AMB_RS01065at 235.999 kb on + strand, within AMB_RS01065at 235.999 kb on + strand, within AMB_RS01065at 236.000 kb on - strand, within AMB_RS01065at 236.000 kb on - strand, within AMB_RS01065at 236.012 kb on - strand, within AMB_RS01065at 236.360 kb on + strandat 236.360 kb on + strandat 236.361 kb on - strandat 236.361 kb on - strandat 236.361 kb on - strandat 236.585 kb on + strand, within AMB_RS01070at 236.585 kb on + strand, within AMB_RS01070at 236.585 kb on + strand, within AMB_RS01070at 236.585 kb on + strand, within AMB_RS01070at 236.680 kb on - strand, within AMB_RS01070at 236.726 kb on + strand, within AMB_RS01070at 236.727 kb on - strand, within AMB_RS01070at 237.293 kb on + strand, within AMB_RS01070at 237.294 kb on - strand, within AMB_RS01070at 237.294 kb on - strand, within AMB_RS01070at 237.294 kb on - strand, within AMB_RS01070at 237.294 kb on - strand, within AMB_RS01070at 237.444 kb on - strand, within AMB_RS01070at 237.444 kb on - strand, within AMB_RS01070at 237.556 kb on + strand, within AMB_RS01070at 237.556 kb on + strand, within AMB_RS01070at 237.557 kb on - strand, within AMB_RS01070at 237.557 kb on - strand, within AMB_RS01070at 237.557 kb on - strand, within AMB_RS01070at 237.740 kb on + strand, within AMB_RS01070at 237.740 kb on + strand, within AMB_RS01070at 237.816 kb on - strand, within AMB_RS01070at 237.912 kb on + strand, within AMB_RS01070at 237.912 kb on + strand, within AMB_RS01070at 237.912 kb on + strand, within AMB_RS01070at 237.912 kb on + strand, within AMB_RS01070at 237.912 kb on + strand, within AMB_RS01070at 237.913 kb on - strand, within AMB_RS01070at 237.913 kb on - strand, within AMB_RS01070at 237.913 kb on - strand, within AMB_RS01070at 237.913 kb on - strand, within AMB_RS01070at 237.913 kb on - strand, within AMB_RS01070at 237.965 kb on + strand, within AMB_RS01070at 237.965 kb on + strand, within AMB_RS01070at 237.966 kb on - strand, within AMB_RS01070at 237.966 kb on - strand, within AMB_RS01070at 237.966 kb on - strand, within AMB_RS01070at 237.966 kb on - strand, within AMB_RS01070at 238.019 kb on + strand, within AMB_RS01070at 238.212 kb on - strandat 238.502 kb on + strandat 238.503 kb on - strandat 238.524 kb on + strandat 238.525 kb on - strandat 238.525 kb on - strandat 238.525 kb on - strandat 238.563 kb on + strandat 238.563 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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235,933 + AMB_RS01065 0.78 +1.1
235,934 - AMB_RS01065 0.78 -1.1
235,934 - AMB_RS01065 0.78 +0.1
235,999 + AMB_RS01065 0.85 -1.4
235,999 + AMB_RS01065 0.85 +0.2
235,999 + AMB_RS01065 0.85 -0.1
235,999 + AMB_RS01065 0.85 -1.6
235,999 + AMB_RS01065 0.85 +0.2
236,000 - AMB_RS01065 0.85 -0.9
236,000 - AMB_RS01065 0.85 -0.1
236,012 - AMB_RS01065 0.86 +0.2
236,360 + +1.0
236,360 + +0.2
236,361 - -0.4
236,361 - -0.1
236,361 - +1.5
236,585 + AMB_RS01070 0.15 -0.9
236,585 + AMB_RS01070 0.15 +0.2
236,585 + AMB_RS01070 0.15 -0.5
236,585 + AMB_RS01070 0.15 -2.2
236,680 - AMB_RS01070 0.19 +0.8
236,726 + AMB_RS01070 0.22 -1.5
236,727 - AMB_RS01070 0.22 -0.3
237,293 + AMB_RS01070 0.50 -1.9
237,294 - AMB_RS01070 0.50 -3.0
237,294 - AMB_RS01070 0.50 -0.9
237,294 - AMB_RS01070 0.50 +0.3
237,294 - AMB_RS01070 0.50 -4.7
237,444 - AMB_RS01070 0.57 -0.9
237,444 - AMB_RS01070 0.57 -1.0
237,556 + AMB_RS01070 0.63 +0.1
237,556 + AMB_RS01070 0.63 -0.1
237,557 - AMB_RS01070 0.63 -0.7
237,557 - AMB_RS01070 0.63 -0.1
237,557 - AMB_RS01070 0.63 -1.4
237,740 + AMB_RS01070 0.72 -0.9
237,740 + AMB_RS01070 0.72 -3.1
237,816 - AMB_RS01070 0.76 +0.1
237,912 + AMB_RS01070 0.81 -0.5
237,912 + AMB_RS01070 0.81 +0.1
237,912 + AMB_RS01070 0.81 +1.5
237,912 + AMB_RS01070 0.81 +0.9
237,912 + AMB_RS01070 0.81 -0.4
237,913 - AMB_RS01070 0.81 +0.2
237,913 - AMB_RS01070 0.81 +0.2
237,913 - AMB_RS01070 0.81 -1.4
237,913 - AMB_RS01070 0.81 -1.4
237,913 - AMB_RS01070 0.81 +0.4
237,965 + AMB_RS01070 0.83 -1.5
237,965 + AMB_RS01070 0.83 -0.9
237,966 - AMB_RS01070 0.83 +0.5
237,966 - AMB_RS01070 0.83 +0.5
237,966 - AMB_RS01070 0.83 -0.1
237,966 - AMB_RS01070 0.83 -1.4
238,019 + AMB_RS01070 0.86 -0.2
238,212 - -0.1
238,502 + -0.5
238,503 - +1.5
238,524 + +0.0
238,525 - -1.1
238,525 - -0.4
238,525 - +0.5
238,563 + -0.1
238,563 + -0.1

Or see this region's nucleotide sequence