Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00965

Experiment: 30_an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00955 and AMB_RS00960 overlap by 14 nucleotidesAMB_RS00960 and AMB_RS00965 overlap by 4 nucleotidesAMB_RS00965 and AMB_RS00970 are separated by 235 nucleotides AMB_RS00955: AMB_RS00955 - ATP-binding protein, at 216,700 to 218,016 _RS00955 AMB_RS00960: AMB_RS00960 - DNA-binding response regulator, at 218,003 to 218,674 _RS00960 AMB_RS00965: AMB_RS00965 - membrane protein, at 218,671 to 218,961 _RS00965 AMB_RS00970: AMB_RS00970 - DUF1924 domain-containing protein, at 219,197 to 220,033 _RS00970 Position (kb) 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1at 218.139 kb on + strand, within AMB_RS00960at 218.139 kb on + strand, within AMB_RS00960at 218.139 kb on + strand, within AMB_RS00960at 218.139 kb on + strand, within AMB_RS00960at 218.140 kb on - strand, within AMB_RS00960at 218.140 kb on - strand, within AMB_RS00960at 218.140 kb on - strand, within AMB_RS00960at 218.382 kb on + strand, within AMB_RS00960at 218.382 kb on + strand, within AMB_RS00960at 218.383 kb on - strand, within AMB_RS00960at 218.383 kb on - strand, within AMB_RS00960at 218.383 kb on - strand, within AMB_RS00960at 218.541 kb on + strand, within AMB_RS00960at 218.541 kb on + strand, within AMB_RS00960at 218.542 kb on - strand, within AMB_RS00960at 218.717 kb on + strand, within AMB_RS00965at 218.717 kb on + strand, within AMB_RS00965at 218.720 kb on + strand, within AMB_RS00965at 218.720 kb on + strand, within AMB_RS00965at 218.720 kb on + strand, within AMB_RS00965at 218.720 kb on + strand, within AMB_RS00965at 219.089 kb on + strandat 219.089 kb on + strandat 219.090 kb on - strandat 219.090 kb on - strandat 219.095 kb on + strandat 219.095 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.139 kb on - strandat 219.139 kb on - strandat 219.139 kb on - strandat 219.139 kb on - strandat 219.139 kb on - strandat 219.139 kb on - strandat 219.144 kb on + strandat 219.144 kb on + strandat 219.144 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.270 kb on - strandat 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.317 kb on + strand, within AMB_RS00970at 219.318 kb on - strand, within AMB_RS00970at 219.809 kb on + strand, within AMB_RS00970at 219.810 kb on - strand, within AMB_RS00970at 219.851 kb on + strand, within AMB_RS00970at 219.851 kb on + strand, within AMB_RS00970at 219.851 kb on + strand, within AMB_RS00970

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_3
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218,139 + AMB_RS00960 0.20 -2.5
218,139 + AMB_RS00960 0.20 -1.7
218,139 + AMB_RS00960 0.20 -0.5
218,139 + AMB_RS00960 0.20 -1.4
218,140 - AMB_RS00960 0.20 -0.1
218,140 - AMB_RS00960 0.20 -0.1
218,140 - AMB_RS00960 0.20 -1.7
218,382 + AMB_RS00960 0.56 -2.8
218,382 + AMB_RS00960 0.56 -0.9
218,383 - AMB_RS00960 0.57 +0.5
218,383 - AMB_RS00960 0.57 -1.9
218,383 - AMB_RS00960 0.57 -1.7
218,541 + AMB_RS00960 0.80 -2.5
218,541 + AMB_RS00960 0.80 -1.7
218,542 - AMB_RS00960 0.80 -1.4
218,717 + AMB_RS00965 0.16 -1.5
218,717 + AMB_RS00965 0.16 -0.9
218,720 + AMB_RS00965 0.17 -0.1
218,720 + AMB_RS00965 0.17 -1.1
218,720 + AMB_RS00965 0.17 -1.9
218,720 + AMB_RS00965 0.17 -0.1
219,089 + -0.5
219,089 + -1.1
219,090 - -0.0
219,090 - -0.3
219,095 + -1.9
219,095 + -0.4
219,138 + -0.0
219,138 + -0.4
219,138 + -0.4
219,138 + +0.3
219,138 + -0.1
219,138 + -0.5
219,139 - -2.2
219,139 - -1.5
219,139 - -2.1
219,139 - +1.1
219,139 - +1.5
219,139 - -0.5
219,144 + +0.4
219,144 + +0.2
219,144 + -0.7
219,269 + +0.5
219,269 + -0.1
219,269 + -0.5
219,269 + -1.1
219,269 + +1.5
219,269 + -2.1
219,269 + +0.0
219,269 + +0.2
219,270 - -1.1
219,293 + AMB_RS00970 0.11 -0.1
219,293 + AMB_RS00970 0.11 -1.1
219,293 + AMB_RS00970 0.11 +1.5
219,293 + AMB_RS00970 0.11 -2.7
219,293 + AMB_RS00970 0.11 -1.5
219,293 + AMB_RS00970 0.11 -0.5
219,293 + AMB_RS00970 0.11 +0.5
219,293 + AMB_RS00970 0.11 -1.1
219,293 + AMB_RS00970 0.11 +0.9
219,293 + AMB_RS00970 0.11 -0.5
219,293 + AMB_RS00970 0.11 -0.7
219,294 - AMB_RS00970 0.12 -0.9
219,294 - AMB_RS00970 0.12 -0.1
219,294 - AMB_RS00970 0.12 -0.5
219,294 - AMB_RS00970 0.12 -0.1
219,294 - AMB_RS00970 0.12 -0.5
219,294 - AMB_RS00970 0.12 -0.5
219,317 + AMB_RS00970 0.14 -1.1
219,318 - AMB_RS00970 0.14 -2.1
219,809 + AMB_RS00970 0.73 -0.5
219,810 - AMB_RS00970 0.73 +0.9
219,851 + AMB_RS00970 0.78 -0.7
219,851 + AMB_RS00970 0.78 -1.4
219,851 + AMB_RS00970 0.78 +1.5

Or see this region's nucleotide sequence