Experiment: 30_an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00635 and AMB_RS00640 are separated by 16 nucleotides AMB_RS00640 and AMB_RS23820 are separated by 30 nucleotides
AMB_RS00635: AMB_RS00635 - gfo/Idh/MocA family oxidoreductase, at 145,312 to 146,325
_RS00635
AMB_RS00640: AMB_RS00640 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 146,342 to 147,442
_RS00640
AMB_RS23820: AMB_RS23820 - hypothetical protein, at 147,473 to 148,933
_RS23820
Position (kb) 146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 146.337 kb on + strand at 146.337 kb on + strand at 146.337 kb on + strand at 147.474 kb on + strand at 147.474 kb on + strand at 147.491 kb on + strand at 147.491 kb on + strand at 147.567 kb on + strand at 147.568 kb on - strand at 147.568 kb on - strand at 147.568 kb on - strand at 147.568 kb on - strand at 147.690 kb on + strand, within AMB_RS23820 at 147.690 kb on + strand, within AMB_RS23820 at 147.690 kb on + strand, within AMB_RS23820 at 147.925 kb on + strand, within AMB_RS23820 at 147.926 kb on - strand, within AMB_RS23820 at 147.926 kb on - strand, within AMB_RS23820 at 147.926 kb on - strand, within AMB_RS23820 at 147.969 kb on + strand, within AMB_RS23820 at 148.035 kb on + strand, within AMB_RS23820 at 148.035 kb on + strand, within AMB_RS23820 at 148.035 kb on + strand, within AMB_RS23820 at 148.035 kb on + strand, within AMB_RS23820 at 148.035 kb on + strand, within AMB_RS23820 at 148.035 kb on + strand, within AMB_RS23820 at 148.036 kb on - strand, within AMB_RS23820 at 148.050 kb on - strand, within AMB_RS23820 at 148.239 kb on - strand, within AMB_RS23820 at 148.385 kb on - strand, within AMB_RS23820 at 148.440 kb on + strand, within AMB_RS23820 at 148.440 kb on + strand, within AMB_RS23820 at 148.440 kb on + strand, within AMB_RS23820 at 148.440 kb on + strand, within AMB_RS23820 at 148.440 kb on + strand, within AMB_RS23820 at 148.440 kb on + strand, within AMB_RS23820 at 148.441 kb on - strand, within AMB_RS23820 at 148.441 kb on - strand, within AMB_RS23820 at 148.441 kb on - strand, within AMB_RS23820 at 148.441 kb on - strand, within AMB_RS23820
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_3 remove 146,337 + -2.4 146,337 + +1.3 146,337 + -0.1 147,474 + +0.1 147,474 + -0.9 147,491 + -2.1 147,491 + -0.1 147,567 + +0.2 147,568 - -2.7 147,568 - +0.5 147,568 - -0.9 147,568 - +0.4 147,690 + AMB_RS23820 0.15 -0.4 147,690 + AMB_RS23820 0.15 -0.8 147,690 + AMB_RS23820 0.15 -0.5 147,925 + AMB_RS23820 0.31 -0.3 147,926 - AMB_RS23820 0.31 +0.5 147,926 - AMB_RS23820 0.31 +0.6 147,926 - AMB_RS23820 0.31 +0.4 147,969 + AMB_RS23820 0.34 -0.1 148,035 + AMB_RS23820 0.38 +0.3 148,035 + AMB_RS23820 0.38 +0.6 148,035 + AMB_RS23820 0.38 -0.5 148,035 + AMB_RS23820 0.38 +0.3 148,035 + AMB_RS23820 0.38 -3.3 148,035 + AMB_RS23820 0.38 -0.0 148,036 - AMB_RS23820 0.39 -0.1 148,050 - AMB_RS23820 0.39 -0.5 148,239 - AMB_RS23820 0.52 -1.9 148,385 - AMB_RS23820 0.62 -0.1 148,440 + AMB_RS23820 0.66 +0.5 148,440 + AMB_RS23820 0.66 -0.3 148,440 + AMB_RS23820 0.66 -0.9 148,440 + AMB_RS23820 0.66 -0.9 148,440 + AMB_RS23820 0.66 -1.4 148,440 + AMB_RS23820 0.66 -0.3 148,441 - AMB_RS23820 0.66 +0.5 148,441 - AMB_RS23820 0.66 -0.1 148,441 - AMB_RS23820 0.66 -0.9 148,441 - AMB_RS23820 0.66 -0.5
Or see this region's nucleotide sequence