Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_862

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_860 and PfGW456L13_861 are separated by 177 nucleotidesPfGW456L13_861 and PfGW456L13_862 are separated by 60 nucleotidesPfGW456L13_862 and PfGW456L13_863 are separated by 192 nucleotides PfGW456L13_860 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 966,955 to 967,506 _860 PfGW456L13_861 - Regulator of sigma D, at 967,684 to 968,142 _861 PfGW456L13_862 - Macrophage infectivity potentiator, at 968,203 to 968,868 _862 PfGW456L13_863 - Twin-arginine translocation protein TatB, at 969,061 to 970,206 _863 Position (kb) 968 969Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 967.307 kb on + strand, within PfGW456L13_860at 967.308 kb on - strand, within PfGW456L13_860at 967.423 kb on + strand, within PfGW456L13_860at 967.505 kb on - strandat 967.514 kb on + strandat 967.514 kb on + strandat 967.514 kb on + strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.524 kb on - strandat 967.524 kb on - strandat 967.534 kb on + strandat 967.534 kb on + strandat 967.535 kb on - strandat 967.561 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.630 kb on + strandat 967.630 kb on + strandat 967.630 kb on + strandat 967.630 kb on + strandat 967.630 kb on + strandat 967.631 kb on - strandat 967.631 kb on - strandat 967.631 kb on - strandat 967.631 kb on - strandat 967.649 kb on + strandat 967.650 kb on - strandat 967.780 kb on + strand, within PfGW456L13_861at 967.780 kb on + strand, within PfGW456L13_861at 967.781 kb on - strand, within PfGW456L13_861at 967.781 kb on - strand, within PfGW456L13_861at 967.861 kb on + strand, within PfGW456L13_861at 967.861 kb on + strand, within PfGW456L13_861at 967.861 kb on + strand, within PfGW456L13_861at 967.861 kb on + strand, within PfGW456L13_861at 967.862 kb on - strand, within PfGW456L13_861at 967.862 kb on - strand, within PfGW456L13_861at 967.862 kb on - strand, within PfGW456L13_861at 967.862 kb on - strand, within PfGW456L13_861at 967.866 kb on - strand, within PfGW456L13_861at 967.888 kb on + strand, within PfGW456L13_861at 967.888 kb on + strand, within PfGW456L13_861at 967.889 kb on - strand, within PfGW456L13_861at 967.889 kb on - strand, within PfGW456L13_861at 967.957 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.285 kb on + strand, within PfGW456L13_862at 968.285 kb on + strand, within PfGW456L13_862at 968.286 kb on - strand, within PfGW456L13_862at 968.286 kb on - strand, within PfGW456L13_862at 968.286 kb on - strand, within PfGW456L13_862at 968.437 kb on - strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.481 kb on + strand, within PfGW456L13_862at 968.481 kb on + strand, within PfGW456L13_862at 968.482 kb on - strand, within PfGW456L13_862at 968.638 kb on + strand, within PfGW456L13_862at 968.638 kb on + strand, within PfGW456L13_862at 968.639 kb on - strand, within PfGW456L13_862at 968.639 kb on - strand, within PfGW456L13_862at 968.639 kb on - strand, within PfGW456L13_862at 968.639 kb on - strand, within PfGW456L13_862at 968.639 kb on - strand, within PfGW456L13_862at 968.685 kb on - strand, within PfGW456L13_862at 968.685 kb on - strand, within PfGW456L13_862at 968.774 kb on + strand, within PfGW456L13_862at 968.774 kb on + strand, within PfGW456L13_862at 968.775 kb on - strand, within PfGW456L13_862at 968.775 kb on - strand, within PfGW456L13_862at 968.775 kb on - strand, within PfGW456L13_862at 968.859 kb on - strandat 968.899 kb on + strandat 968.900 kb on - strandat 969.023 kb on + strandat 969.023 kb on + strandat 969.023 kb on + strandat 969.023 kb on + strandat 969.023 kb on + strandat 969.023 kb on + strandat 969.023 kb on + strandat 969.023 kb on + strandat 969.023 kb on + strandat 969.023 kb on + strandat 969.024 kb on - strandat 969.024 kb on - strandat 969.024 kb on - strandat 969.024 kb on - strandat 969.026 kb on + strandat 969.026 kb on + strandat 969.026 kb on + strandat 969.027 kb on - strandat 969.055 kb on + strandat 969.055 kb on + strandat 969.056 kb on - strandat 969.056 kb on - strandat 969.056 kb on - strandat 969.056 kb on - strandat 969.056 kb on - strandat 969.083 kb on + strandat 969.083 kb on + strandat 969.362 kb on - strandat 969.425 kb on + strand, within PfGW456L13_863at 969.426 kb on - strand, within PfGW456L13_863at 969.426 kb on - strand, within PfGW456L13_863at 969.426 kb on - strand, within PfGW456L13_863at 969.681 kb on + strand, within PfGW456L13_863at 969.682 kb on - strand, within PfGW456L13_863at 969.682 kb on - strand, within PfGW456L13_863at 969.682 kb on - strand, within PfGW456L13_863at 969.682 kb on - strand, within PfGW456L13_863

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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967,307 + PfGW456L13_860 0.64 +0.5
967,308 - PfGW456L13_860 0.64 -0.6
967,423 + PfGW456L13_860 0.85 -1.1
967,505 - -1.3
967,514 + +0.1
967,514 + +0.6
967,514 + -3.5
967,515 - +0.6
967,515 - +0.1
967,515 - +2.4
967,515 - +0.2
967,515 - -0.5
967,515 - -0.6
967,515 - -2.0
967,524 - -0.9
967,524 - +1.1
967,534 + -2.4
967,534 + +1.4
967,535 - -0.6
967,561 + +1.0
967,589 + +0.3
967,589 + +1.1
967,589 + +1.6
967,589 + -0.5
967,589 + -0.2
967,589 + +0.8
967,589 + -2.3
967,589 + +0.4
967,589 + +1.0
967,589 + +2.3
967,590 - -0.7
967,590 - -0.8
967,590 - +1.4
967,590 - -0.9
967,590 - +2.7
967,590 - -0.1
967,590 - -1.7
967,630 + -1.9
967,630 + +0.1
967,630 + +0.6
967,630 + +0.9
967,630 + -2.1
967,631 - -1.3
967,631 - -1.6
967,631 - -1.7
967,631 - +2.3
967,649 + -2.0
967,650 - +0.4
967,780 + PfGW456L13_861 0.21 +1.3
967,780 + PfGW456L13_861 0.21 +0.3
967,781 - PfGW456L13_861 0.21 +1.3
967,781 - PfGW456L13_861 0.21 -0.3
967,861 + PfGW456L13_861 0.39 -0.8
967,861 + PfGW456L13_861 0.39 +0.8
967,861 + PfGW456L13_861 0.39 -2.3
967,861 + PfGW456L13_861 0.39 -2.5
967,862 - PfGW456L13_861 0.39 -2.8
967,862 - PfGW456L13_861 0.39 -0.7
967,862 - PfGW456L13_861 0.39 -3.2
967,862 - PfGW456L13_861 0.39 -0.9
967,866 - PfGW456L13_861 0.40 +2.6
967,888 + PfGW456L13_861 0.44 -0.1
967,888 + PfGW456L13_861 0.44 -2.9
967,889 - PfGW456L13_861 0.45 -3.1
967,889 - PfGW456L13_861 0.45 -1.9
967,957 + PfGW456L13_861 0.59 +3.8
968,019 + PfGW456L13_861 0.73 +0.7
968,019 + PfGW456L13_861 0.73 +0.4
968,019 + PfGW456L13_861 0.73 +0.6
968,019 + PfGW456L13_861 0.73 +1.3
968,019 + PfGW456L13_861 0.73 -1.6
968,019 + PfGW456L13_861 0.73 +1.1
968,019 + PfGW456L13_861 0.73 -0.2
968,019 + PfGW456L13_861 0.73 +0.0
968,020 - PfGW456L13_861 0.73 +2.8
968,020 - PfGW456L13_861 0.73 -1.1
968,020 - PfGW456L13_861 0.73 -1.9
968,020 - PfGW456L13_861 0.73 +1.3
968,020 - PfGW456L13_861 0.73 +1.6
968,020 - PfGW456L13_861 0.73 -1.8
968,020 - PfGW456L13_861 0.73 +0.4
968,020 - PfGW456L13_861 0.73 +1.3
968,020 - PfGW456L13_861 0.73 -0.1
968,020 - PfGW456L13_861 0.73 -0.2
968,020 - PfGW456L13_861 0.73 -0.4
968,020 - PfGW456L13_861 0.73 +1.9
968,020 - PfGW456L13_861 0.73 +2.4
968,285 + PfGW456L13_862 0.12 -1.9
968,285 + PfGW456L13_862 0.12 -0.8
968,286 - PfGW456L13_862 0.12 +0.9
968,286 - PfGW456L13_862 0.12 -0.3
968,286 - PfGW456L13_862 0.12 -2.8
968,437 - PfGW456L13_862 0.35 -0.7
968,438 + PfGW456L13_862 0.35 +0.9
968,438 + PfGW456L13_862 0.35 +1.0
968,438 + PfGW456L13_862 0.35 -1.1
968,438 + PfGW456L13_862 0.35 +0.7
968,438 + PfGW456L13_862 0.35 -1.1
968,438 + PfGW456L13_862 0.35 -1.3
968,438 + PfGW456L13_862 0.35 -3.3
968,438 + PfGW456L13_862 0.35 +0.5
968,438 + PfGW456L13_862 0.35 +1.2
968,438 + PfGW456L13_862 0.35 -0.7
968,438 + PfGW456L13_862 0.35 -3.1
968,439 - PfGW456L13_862 0.35 -1.0
968,439 - PfGW456L13_862 0.35 -2.1
968,439 - PfGW456L13_862 0.35 +0.7
968,439 - PfGW456L13_862 0.35 +2.1
968,439 - PfGW456L13_862 0.35 +0.3
968,439 - PfGW456L13_862 0.35 -3.2
968,439 - PfGW456L13_862 0.35 -3.8
968,439 - PfGW456L13_862 0.35 -1.1
968,439 - PfGW456L13_862 0.35 -0.6
968,439 - PfGW456L13_862 0.35 -2.4
968,439 - PfGW456L13_862 0.35 -0.7
968,439 - PfGW456L13_862 0.35 -1.0
968,481 + PfGW456L13_862 0.42 -1.0
968,481 + PfGW456L13_862 0.42 -0.8
968,482 - PfGW456L13_862 0.42 -3.3
968,638 + PfGW456L13_862 0.65 +0.3
968,638 + PfGW456L13_862 0.65 -0.6
968,639 - PfGW456L13_862 0.65 -0.5
968,639 - PfGW456L13_862 0.65 +0.1
968,639 - PfGW456L13_862 0.65 -0.0
968,639 - PfGW456L13_862 0.65 -1.9
968,639 - PfGW456L13_862 0.65 -0.6
968,685 - PfGW456L13_862 0.72 +1.7
968,685 - PfGW456L13_862 0.72 +1.1
968,774 + PfGW456L13_862 0.86 -1.2
968,774 + PfGW456L13_862 0.86 -0.3
968,775 - PfGW456L13_862 0.86 -1.9
968,775 - PfGW456L13_862 0.86 +1.1
968,775 - PfGW456L13_862 0.86 -1.8
968,859 - +0.6
968,899 + +1.4
968,900 - -0.5
969,023 + -1.4
969,023 + +0.4
969,023 + -1.0
969,023 + -0.5
969,023 + +1.2
969,023 + +0.5
969,023 + -0.1
969,023 + -3.5
969,023 + +1.6
969,023 + +0.3
969,024 - +2.1
969,024 - -1.9
969,024 - +2.1
969,024 - +0.0
969,026 + +0.7
969,026 + -0.4
969,026 + +0.9
969,027 - +2.6
969,055 + -2.5
969,055 + -1.9
969,056 - +1.4
969,056 - -1.2
969,056 - +0.6
969,056 - +0.6
969,056 - +1.3
969,083 + -2.4
969,083 + +2.7
969,362 - -0.3
969,425 + PfGW456L13_863 0.32 +0.1
969,426 - PfGW456L13_863 0.32 +0.6
969,426 - PfGW456L13_863 0.32 +0.9
969,426 - PfGW456L13_863 0.32 +0.1
969,681 + PfGW456L13_863 0.54 -0.7
969,682 - PfGW456L13_863 0.54 -1.5
969,682 - PfGW456L13_863 0.54 +0.3
969,682 - PfGW456L13_863 0.54 -2.1
969,682 - PfGW456L13_863 0.54 +0.1

Or see this region's nucleotide sequence