Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4832

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4831 and PfGW456L13_4832 are separated by 156 nucleotidesPfGW456L13_4832 and PfGW456L13_4833 are separated by 29 nucleotides PfGW456L13_4831 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data), at 5,393,383 to 5,394,405 _4831 PfGW456L13_4832 - PTS system, glucose-specific IIA component / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 5,394,562 to 5,397,078 _4832 PfGW456L13_4833 - PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69), at 5,397,108 to 5,398,823 _4833 Position (kb) 5394 5395 5396 5397 5398Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5393.838 kb on + strand, within PfGW456L13_4831at 5394.133 kb on + strand, within PfGW456L13_4831at 5394.319 kb on + strandat 5394.319 kb on + strandat 5394.319 kb on + strandat 5394.319 kb on + strandat 5394.320 kb on - strandat 5394.396 kb on + strandat 5394.397 kb on - strandat 5394.403 kb on + strandat 5394.403 kb on + strandat 5394.415 kb on + strandat 5394.416 kb on - strandat 5394.416 kb on - strandat 5394.416 kb on - strandat 5394.483 kb on + strandat 5394.509 kb on + strandat 5394.510 kb on - strandat 5394.510 kb on - strandat 5394.510 kb on - strandat 5394.567 kb on + strandat 5394.567 kb on + strandat 5394.568 kb on - strandat 5394.568 kb on - strandat 5394.568 kb on - strandat 5394.568 kb on - strandat 5394.576 kb on + strandat 5394.576 kb on + strandat 5394.577 kb on - strandat 5394.577 kb on - strandat 5394.577 kb on - strandat 5394.591 kb on - strandat 5394.697 kb on - strandat 5395.013 kb on + strand, within PfGW456L13_4832at 5395.013 kb on + strand, within PfGW456L13_4832at 5395.014 kb on - strand, within PfGW456L13_4832at 5395.014 kb on - strand, within PfGW456L13_4832at 5395.014 kb on - strand, within PfGW456L13_4832at 5395.014 kb on - strand, within PfGW456L13_4832at 5395.014 kb on - strand, within PfGW456L13_4832at 5395.394 kb on + strand, within PfGW456L13_4832at 5395.394 kb on + strand, within PfGW456L13_4832at 5395.394 kb on + strand, within PfGW456L13_4832at 5395.394 kb on + strand, within PfGW456L13_4832at 5395.395 kb on - strand, within PfGW456L13_4832at 5395.395 kb on - strand, within PfGW456L13_4832at 5395.395 kb on - strand, within PfGW456L13_4832at 5395.395 kb on - strand, within PfGW456L13_4832at 5395.395 kb on - strand, within PfGW456L13_4832at 5395.508 kb on + strand, within PfGW456L13_4832at 5395.509 kb on - strand, within PfGW456L13_4832at 5395.509 kb on - strand, within PfGW456L13_4832at 5395.509 kb on - strand, within PfGW456L13_4832at 5395.652 kb on + strand, within PfGW456L13_4832at 5395.822 kb on + strand, within PfGW456L13_4832at 5395.823 kb on - strand, within PfGW456L13_4832at 5396.323 kb on + strand, within PfGW456L13_4832at 5396.323 kb on + strand, within PfGW456L13_4832at 5396.323 kb on + strand, within PfGW456L13_4832at 5396.405 kb on - strand, within PfGW456L13_4832at 5396.405 kb on - strand, within PfGW456L13_4832at 5396.405 kb on - strand, within PfGW456L13_4832at 5396.734 kb on + strand, within PfGW456L13_4832at 5396.734 kb on + strand, within PfGW456L13_4832at 5396.734 kb on + strand, within PfGW456L13_4832at 5397.111 kb on + strandat 5397.111 kb on + strandat 5397.112 kb on - strandat 5397.112 kb on - strandat 5397.112 kb on - strandat 5397.217 kb on + strandat 5397.217 kb on + strandat 5397.217 kb on + strandat 5397.218 kb on - strandat 5397.218 kb on - strandat 5397.218 kb on - strandat 5397.218 kb on - strandat 5397.447 kb on + strand, within PfGW456L13_4833at 5397.447 kb on + strand, within PfGW456L13_4833at 5397.447 kb on + strand, within PfGW456L13_4833at 5397.448 kb on - strand, within PfGW456L13_4833at 5397.448 kb on - strand, within PfGW456L13_4833at 5397.480 kb on + strand, within PfGW456L13_4833at 5397.561 kb on + strand, within PfGW456L13_4833at 5397.562 kb on - strand, within PfGW456L13_4833at 5397.562 kb on - strand, within PfGW456L13_4833

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,393,838 + PfGW456L13_4831 0.44 +0.2
5,394,133 + PfGW456L13_4831 0.73 +0.3
5,394,319 + +1.2
5,394,319 + -1.1
5,394,319 + +1.7
5,394,319 + -0.1
5,394,320 - -0.1
5,394,396 + +0.9
5,394,397 - +1.3
5,394,403 + -3.3
5,394,403 + +0.5
5,394,415 + -1.7
5,394,416 - +0.1
5,394,416 - -1.3
5,394,416 - +1.5
5,394,483 + -1.2
5,394,509 + +1.1
5,394,510 - -1.0
5,394,510 - -0.7
5,394,510 - -3.0
5,394,567 + +3.3
5,394,567 + +1.1
5,394,568 - -0.2
5,394,568 - +1.7
5,394,568 - +0.2
5,394,568 - -0.9
5,394,576 + -0.2
5,394,576 + -2.8
5,394,577 - -1.2
5,394,577 - +1.9
5,394,577 - +0.6
5,394,591 - -3.5
5,394,697 - +1.6
5,395,013 + PfGW456L13_4832 0.18 +1.2
5,395,013 + PfGW456L13_4832 0.18 +1.5
5,395,014 - PfGW456L13_4832 0.18 -0.7
5,395,014 - PfGW456L13_4832 0.18 -1.7
5,395,014 - PfGW456L13_4832 0.18 +1.7
5,395,014 - PfGW456L13_4832 0.18 +0.0
5,395,014 - PfGW456L13_4832 0.18 +0.1
5,395,394 + PfGW456L13_4832 0.33 -0.2
5,395,394 + PfGW456L13_4832 0.33 +0.6
5,395,394 + PfGW456L13_4832 0.33 +1.3
5,395,394 + PfGW456L13_4832 0.33 +1.0
5,395,395 - PfGW456L13_4832 0.33 -0.5
5,395,395 - PfGW456L13_4832 0.33 +0.2
5,395,395 - PfGW456L13_4832 0.33 -2.6
5,395,395 - PfGW456L13_4832 0.33 +1.8
5,395,395 - PfGW456L13_4832 0.33 -2.3
5,395,508 + PfGW456L13_4832 0.38 -2.1
5,395,509 - PfGW456L13_4832 0.38 +0.5
5,395,509 - PfGW456L13_4832 0.38 -1.6
5,395,509 - PfGW456L13_4832 0.38 -0.5
5,395,652 + PfGW456L13_4832 0.43 -3.2
5,395,822 + PfGW456L13_4832 0.50 -0.4
5,395,823 - PfGW456L13_4832 0.50 +0.0
5,396,323 + PfGW456L13_4832 0.70 -1.8
5,396,323 + PfGW456L13_4832 0.70 +1.2
5,396,323 + PfGW456L13_4832 0.70 -1.9
5,396,405 - PfGW456L13_4832 0.73 +0.1
5,396,405 - PfGW456L13_4832 0.73 -0.6
5,396,405 - PfGW456L13_4832 0.73 +1.6
5,396,734 + PfGW456L13_4832 0.86 -0.1
5,396,734 + PfGW456L13_4832 0.86 -3.0
5,396,734 + PfGW456L13_4832 0.86 -2.0
5,397,111 + +1.1
5,397,111 + +0.9
5,397,112 - +1.3
5,397,112 - -0.6
5,397,112 - +0.3
5,397,217 + +1.2
5,397,217 + +2.1
5,397,217 + +1.7
5,397,218 - -3.4
5,397,218 - +2.2
5,397,218 - +0.9
5,397,218 - +1.4
5,397,447 + PfGW456L13_4833 0.20 +1.5
5,397,447 + PfGW456L13_4833 0.20 -2.2
5,397,447 + PfGW456L13_4833 0.20 -2.1
5,397,448 - PfGW456L13_4833 0.20 -1.0
5,397,448 - PfGW456L13_4833 0.20 +2.5
5,397,480 + PfGW456L13_4833 0.22 -0.4
5,397,561 + PfGW456L13_4833 0.26 -3.2
5,397,562 - PfGW456L13_4833 0.26 +1.5
5,397,562 - PfGW456L13_4833 0.26 +0.5

Or see this region's nucleotide sequence