Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3704 and PfGW456L13_3705 are separated by 200 nucleotides PfGW456L13_3705 and PfGW456L13_3706 are separated by 100 nucleotides
PfGW456L13_3704 - Transcriptional regulator RpiR in protein degradation cluster, at 4,166,205 to 4,167,113
_3704
PfGW456L13_3705 - hypothetical protein, at 4,167,314 to 4,167,547
_3705
PfGW456L13_3706 - Heavy metal RND efflux outer membrane protein, CzcC family, at 4,167,648 to 4,168,904
_3706
Position (kb) 4167
4168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4166.643 kb on + strand, within PfGW456L13_3704 at 4166.670 kb on + strand, within PfGW456L13_3704 at 4166.671 kb on - strand, within PfGW456L13_3704 at 4166.671 kb on - strand, within PfGW456L13_3704 at 4166.671 kb on - strand, within PfGW456L13_3704 at 4166.818 kb on - strand, within PfGW456L13_3704 at 4166.977 kb on + strand, within PfGW456L13_3704 at 4167.072 kb on + strand at 4167.073 kb on - strand at 4167.193 kb on + strand at 4167.193 kb on + strand at 4167.194 kb on - strand at 4167.216 kb on - strand at 4167.216 kb on - strand at 4167.245 kb on - strand at 4167.508 kb on - strand, within PfGW456L13_3705 at 4167.508 kb on - strand, within PfGW456L13_3705 at 4167.576 kb on + strand at 4167.577 kb on - strand at 4167.643 kb on + strand at 4167.643 kb on + strand at 4167.663 kb on + strand at 4167.663 kb on + strand at 4167.663 kb on + strand at 4167.663 kb on + strand at 4167.664 kb on - strand at 4167.844 kb on + strand, within PfGW456L13_3706 at 4167.844 kb on + strand, within PfGW456L13_3706 at 4167.844 kb on + strand, within PfGW456L13_3706 at 4167.844 kb on + strand, within PfGW456L13_3706 at 4167.845 kb on - strand, within PfGW456L13_3706 at 4167.845 kb on - strand, within PfGW456L13_3706 at 4167.879 kb on + strand, within PfGW456L13_3706 at 4167.879 kb on + strand, within PfGW456L13_3706 at 4168.052 kb on - strand, within PfGW456L13_3706 at 4168.052 kb on - strand, within PfGW456L13_3706 at 4168.052 kb on - strand, within PfGW456L13_3706 at 4168.086 kb on + strand, within PfGW456L13_3706 at 4168.086 kb on + strand, within PfGW456L13_3706 at 4168.087 kb on - strand, within PfGW456L13_3706 at 4168.087 kb on - strand, within PfGW456L13_3706 at 4168.087 kb on - strand, within PfGW456L13_3706 at 4168.126 kb on - strand, within PfGW456L13_3706 at 4168.126 kb on - strand, within PfGW456L13_3706 at 4168.126 kb on - strand, within PfGW456L13_3706 at 4168.126 kb on - strand, within PfGW456L13_3706 at 4168.126 kb on - strand, within PfGW456L13_3706 at 4168.126 kb on - strand, within PfGW456L13_3706 at 4168.360 kb on - strand, within PfGW456L13_3706 at 4168.367 kb on + strand, within PfGW456L13_3706 at 4168.483 kb on - strand, within PfGW456L13_3706 at 4168.483 kb on - strand, within PfGW456L13_3706 at 4168.483 kb on - strand, within PfGW456L13_3706
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 4,166,643 + PfGW456L13_3704 0.48 -1.4 4,166,670 + PfGW456L13_3704 0.51 -0.6 4,166,671 - PfGW456L13_3704 0.51 -0.7 4,166,671 - PfGW456L13_3704 0.51 +1.2 4,166,671 - PfGW456L13_3704 0.51 -0.9 4,166,818 - PfGW456L13_3704 0.67 -1.6 4,166,977 + PfGW456L13_3704 0.85 -1.0 4,167,072 + -1.6 4,167,073 - -0.4 4,167,193 + -2.3 4,167,193 + +0.4 4,167,194 - +0.6 4,167,216 - +0.8 4,167,216 - -0.2 4,167,245 - +0.1 4,167,508 - PfGW456L13_3705 0.83 -1.5 4,167,508 - PfGW456L13_3705 0.83 -2.4 4,167,576 + +0.3 4,167,577 - -0.9 4,167,643 + +0.4 4,167,643 + +2.4 4,167,663 + +0.2 4,167,663 + +2.0 4,167,663 + +0.9 4,167,663 + -0.5 4,167,664 - +0.5 4,167,844 + PfGW456L13_3706 0.16 +0.1 4,167,844 + PfGW456L13_3706 0.16 +0.2 4,167,844 + PfGW456L13_3706 0.16 +0.5 4,167,844 + PfGW456L13_3706 0.16 +1.2 4,167,845 - PfGW456L13_3706 0.16 -2.1 4,167,845 - PfGW456L13_3706 0.16 -1.1 4,167,879 + PfGW456L13_3706 0.18 +0.1 4,167,879 + PfGW456L13_3706 0.18 +1.5 4,168,052 - PfGW456L13_3706 0.32 -1.0 4,168,052 - PfGW456L13_3706 0.32 -0.7 4,168,052 - PfGW456L13_3706 0.32 +0.2 4,168,086 + PfGW456L13_3706 0.35 +1.3 4,168,086 + PfGW456L13_3706 0.35 +1.9 4,168,087 - PfGW456L13_3706 0.35 -0.4 4,168,087 - PfGW456L13_3706 0.35 -0.2 4,168,087 - PfGW456L13_3706 0.35 -3.2 4,168,126 - PfGW456L13_3706 0.38 -1.2 4,168,126 - PfGW456L13_3706 0.38 +0.4 4,168,126 - PfGW456L13_3706 0.38 -1.1 4,168,126 - PfGW456L13_3706 0.38 +0.4 4,168,126 - PfGW456L13_3706 0.38 -0.3 4,168,126 - PfGW456L13_3706 0.38 -0.1 4,168,360 - PfGW456L13_3706 0.57 +0.3 4,168,367 + PfGW456L13_3706 0.57 -1.1 4,168,483 - PfGW456L13_3706 0.66 +0.3 4,168,483 - PfGW456L13_3706 0.66 +0.5 4,168,483 - PfGW456L13_3706 0.66 -0.8
Or see this region's nucleotide sequence