Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2356

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2355 and PfGW456L13_2356 overlap by 1 nucleotidesPfGW456L13_2356 and PfGW456L13_2357 overlap by 11 nucleotidesPfGW456L13_2357 and PfGW456L13_2358 overlap by 4 nucleotides PfGW456L13_2355 - sigma-54 dependent transcriptional regulator, at 2,587,710 to 2,589,635 _2355 PfGW456L13_2356 - Lipid A export ATP-binding/permease protein MsbA, at 2,589,635 to 2,591,353 _2356 PfGW456L13_2357 - Extracellular protease, at 2,591,343 to 2,592,020 _2357 PfGW456L13_2358 - Probable alkylhalidase homolog (EC 3.8.1.1), at 2,592,017 to 2,593,315 _2358 Position (kb) 2589 2590 2591 2592Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2588.635 kb on - strand, within PfGW456L13_2355at 2588.635 kb on - strand, within PfGW456L13_2355at 2589.606 kb on + strandat 2589.707 kb on + strandat 2589.708 kb on - strandat 2589.708 kb on - strandat 2589.708 kb on - strandat 2589.708 kb on - strandat 2590.367 kb on + strand, within PfGW456L13_2356at 2590.367 kb on + strand, within PfGW456L13_2356at 2590.368 kb on - strand, within PfGW456L13_2356at 2590.526 kb on + strand, within PfGW456L13_2356at 2590.526 kb on + strand, within PfGW456L13_2356at 2590.527 kb on - strand, within PfGW456L13_2356at 2590.766 kb on - strand, within PfGW456L13_2356at 2590.857 kb on + strand, within PfGW456L13_2356at 2591.245 kb on + strandat 2591.245 kb on + strandat 2591.245 kb on + strandat 2591.245 kb on + strandat 2591.246 kb on - strandat 2591.246 kb on - strandat 2591.246 kb on - strandat 2591.246 kb on - strandat 2591.246 kb on - strandat 2591.246 kb on - strandat 2591.246 kb on - strandat 2591.246 kb on - strandat 2591.319 kb on + strandat 2591.320 kb on - strandat 2591.757 kb on + strand, within PfGW456L13_2357at 2591.862 kb on + strand, within PfGW456L13_2357at 2591.863 kb on - strand, within PfGW456L13_2357at 2592.226 kb on + strand, within PfGW456L13_2358at 2592.263 kb on + strand, within PfGW456L13_2358at 2592.263 kb on + strand, within PfGW456L13_2358at 2592.263 kb on + strand, within PfGW456L13_2358at 2592.263 kb on + strand, within PfGW456L13_2358at 2592.263 kb on + strand, within PfGW456L13_2358at 2592.264 kb on - strand, within PfGW456L13_2358at 2592.264 kb on - strand, within PfGW456L13_2358at 2592.264 kb on - strand, within PfGW456L13_2358at 2592.264 kb on - strand, within PfGW456L13_2358at 2592.264 kb on - strand, within PfGW456L13_2358

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,588,635 - PfGW456L13_2355 0.48 +1.6
2,588,635 - PfGW456L13_2355 0.48 +0.7
2,589,606 + -1.2
2,589,707 + -1.5
2,589,708 - -0.5
2,589,708 - -0.7
2,589,708 - -0.5
2,589,708 - -1.2
2,590,367 + PfGW456L13_2356 0.43 -0.9
2,590,367 + PfGW456L13_2356 0.43 -0.7
2,590,368 - PfGW456L13_2356 0.43 -0.3
2,590,526 + PfGW456L13_2356 0.52 -0.2
2,590,526 + PfGW456L13_2356 0.52 +1.4
2,590,527 - PfGW456L13_2356 0.52 +0.0
2,590,766 - PfGW456L13_2356 0.66 -0.2
2,590,857 + PfGW456L13_2356 0.71 -0.2
2,591,245 + -0.1
2,591,245 + +1.6
2,591,245 + -1.7
2,591,245 + +0.7
2,591,246 - +0.6
2,591,246 - +0.2
2,591,246 - +0.3
2,591,246 - -0.1
2,591,246 - +0.4
2,591,246 - -3.4
2,591,246 - +1.6
2,591,246 - -2.1
2,591,319 + +0.5
2,591,320 - -2.7
2,591,757 + PfGW456L13_2357 0.61 -1.0
2,591,862 + PfGW456L13_2357 0.77 -0.9
2,591,863 - PfGW456L13_2357 0.77 -1.8
2,592,226 + PfGW456L13_2358 0.16 -1.4
2,592,263 + PfGW456L13_2358 0.19 -3.1
2,592,263 + PfGW456L13_2358 0.19 +0.5
2,592,263 + PfGW456L13_2358 0.19 +0.8
2,592,263 + PfGW456L13_2358 0.19 +0.5
2,592,263 + PfGW456L13_2358 0.19 +0.8
2,592,264 - PfGW456L13_2358 0.19 -2.1
2,592,264 - PfGW456L13_2358 0.19 +4.3
2,592,264 - PfGW456L13_2358 0.19 -2.3
2,592,264 - PfGW456L13_2358 0.19 -0.2
2,592,264 - PfGW456L13_2358 0.19 +0.0

Or see this region's nucleotide sequence