Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2330

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_2328 and PfGW456L13_2329 are separated by 18 nucleotidesPfGW456L13_2329 and PfGW456L13_2330 overlap by 8 nucleotidesPfGW456L13_2330 and PfGW456L13_2331 overlap by 4 nucleotides PfGW456L13_2328 - L-Proline/Glycine betaine transporter ProP, at 2,559,293 to 2,560,672 _2328 PfGW456L13_2329 - Endoribonuclease L-PSP, at 2,560,691 to 2,561,083 _2329 PfGW456L13_2330 - Demethylmenaquinone methyltransferase, at 2,561,076 to 2,561,687 _2330 PfGW456L13_2331 - Cys regulon transcriptional activator CysB, at 2,561,684 to 2,562,601 _2331 Position (kb) 2561 2562Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2560.090 kb on + strand, within PfGW456L13_2328at 2560.112 kb on + strand, within PfGW456L13_2328at 2560.113 kb on - strand, within PfGW456L13_2328at 2560.113 kb on - strand, within PfGW456L13_2328at 2560.113 kb on - strand, within PfGW456L13_2328at 2560.331 kb on + strand, within PfGW456L13_2328at 2560.364 kb on + strand, within PfGW456L13_2328at 2560.364 kb on + strand, within PfGW456L13_2328at 2560.365 kb on - strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.436 kb on + strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.437 kb on - strand, within PfGW456L13_2328at 2560.475 kb on - strand, within PfGW456L13_2328at 2560.529 kb on + strand, within PfGW456L13_2328at 2560.529 kb on + strand, within PfGW456L13_2328at 2560.529 kb on + strand, within PfGW456L13_2328at 2560.529 kb on + strand, within PfGW456L13_2328at 2560.530 kb on - strand, within PfGW456L13_2328at 2560.530 kb on - strand, within PfGW456L13_2328at 2560.530 kb on - strand, within PfGW456L13_2328at 2560.663 kb on + strandat 2560.685 kb on + strandat 2560.685 kb on + strandat 2560.685 kb on + strandat 2560.686 kb on - strandat 2560.686 kb on - strandat 2560.718 kb on + strandat 2560.839 kb on + strand, within PfGW456L13_2329at 2560.840 kb on - strand, within PfGW456L13_2329at 2560.961 kb on + strand, within PfGW456L13_2329at 2560.961 kb on + strand, within PfGW456L13_2329at 2561.025 kb on + strand, within PfGW456L13_2329at 2561.188 kb on + strand, within PfGW456L13_2330at 2561.189 kb on - strand, within PfGW456L13_2330at 2561.189 kb on - strand, within PfGW456L13_2330at 2561.189 kb on - strand, within PfGW456L13_2330at 2561.370 kb on - strand, within PfGW456L13_2330at 2561.685 kb on + strandat 2562.085 kb on - strand, within PfGW456L13_2331at 2562.632 kb on + strandat 2562.633 kb on - strandat 2562.633 kb on - strandat 2562.681 kb on + strandat 2562.682 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
2,560,090 + PfGW456L13_2328 0.58 +1.6
2,560,112 + PfGW456L13_2328 0.59 +0.4
2,560,113 - PfGW456L13_2328 0.59 +2.5
2,560,113 - PfGW456L13_2328 0.59 +1.4
2,560,113 - PfGW456L13_2328 0.59 -0.8
2,560,331 + PfGW456L13_2328 0.75 -1.8
2,560,364 + PfGW456L13_2328 0.78 -1.3
2,560,364 + PfGW456L13_2328 0.78 -1.6
2,560,365 - PfGW456L13_2328 0.78 +2.8
2,560,436 + PfGW456L13_2328 0.83 +0.7
2,560,436 + PfGW456L13_2328 0.83 +0.2
2,560,436 + PfGW456L13_2328 0.83 -0.5
2,560,436 + PfGW456L13_2328 0.83 -0.2
2,560,436 + PfGW456L13_2328 0.83 +3.2
2,560,436 + PfGW456L13_2328 0.83 -2.3
2,560,436 + PfGW456L13_2328 0.83 -2.9
2,560,436 + PfGW456L13_2328 0.83 +2.0
2,560,436 + PfGW456L13_2328 0.83 -3.5
2,560,436 + PfGW456L13_2328 0.83 +0.9
2,560,436 + PfGW456L13_2328 0.83 -0.5
2,560,437 - PfGW456L13_2328 0.83 +1.6
2,560,437 - PfGW456L13_2328 0.83 -1.2
2,560,437 - PfGW456L13_2328 0.83 +1.9
2,560,437 - PfGW456L13_2328 0.83 -1.3
2,560,437 - PfGW456L13_2328 0.83 +0.5
2,560,437 - PfGW456L13_2328 0.83 +1.8
2,560,437 - PfGW456L13_2328 0.83 +0.5
2,560,437 - PfGW456L13_2328 0.83 -0.3
2,560,437 - PfGW456L13_2328 0.83 -1.8
2,560,437 - PfGW456L13_2328 0.83 +2.4
2,560,437 - PfGW456L13_2328 0.83 -1.7
2,560,437 - PfGW456L13_2328 0.83 -0.6
2,560,475 - PfGW456L13_2328 0.86 +0.9
2,560,529 + PfGW456L13_2328 0.90 +1.5
2,560,529 + PfGW456L13_2328 0.90 +0.5
2,560,529 + PfGW456L13_2328 0.90 -2.4
2,560,529 + PfGW456L13_2328 0.90 +2.6
2,560,530 - PfGW456L13_2328 0.90 +0.1
2,560,530 - PfGW456L13_2328 0.90 +2.7
2,560,530 - PfGW456L13_2328 0.90 -2.4
2,560,663 + +0.7
2,560,685 + -0.5
2,560,685 + -1.5
2,560,685 + +0.4
2,560,686 - -0.5
2,560,686 - -0.4
2,560,718 + +1.8
2,560,839 + PfGW456L13_2329 0.38 -2.0
2,560,840 - PfGW456L13_2329 0.38 +1.7
2,560,961 + PfGW456L13_2329 0.69 +1.2
2,560,961 + PfGW456L13_2329 0.69 +1.0
2,561,025 + PfGW456L13_2329 0.85 -2.3
2,561,188 + PfGW456L13_2330 0.18 -0.4
2,561,189 - PfGW456L13_2330 0.18 -3.5
2,561,189 - PfGW456L13_2330 0.18 -1.8
2,561,189 - PfGW456L13_2330 0.18 -1.5
2,561,370 - PfGW456L13_2330 0.48 -3.1
2,561,685 + -2.0
2,562,085 - PfGW456L13_2331 0.44 -1.4
2,562,632 + +0.6
2,562,633 - -1.5
2,562,633 - +1.3
2,562,681 + +2.0
2,562,682 - -0.6

Or see this region's nucleotide sequence