Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2115

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2114 and PfGW456L13_2115 are separated by 168 nucleotidesPfGW456L13_2115 and PfGW456L13_2116 are separated by 16 nucleotidesPfGW456L13_2116 and PfGW456L13_2117 are separated by 123 nucleotides PfGW456L13_2114 - Molybdenum cofactor biosynthesis protein MoaA, at 2,318,855 to 2,319,823 _2114 PfGW456L13_2115 - lipoprotein, putative, at 2,319,992 to 2,320,600 _2115 PfGW456L13_2116 - FIG003620: Proteophosphoglycan precursor (Fragment), at 2,320,617 to 2,321,177 _2116 PfGW456L13_2117 - transcriptional regulator, at 2,321,301 to 2,322,017 _2117 Position (kb) 2319 2320 2321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2319.011 kb on + strand, within PfGW456L13_2114at 2319.011 kb on + strand, within PfGW456L13_2114at 2319.011 kb on + strand, within PfGW456L13_2114at 2319.241 kb on + strand, within PfGW456L13_2114at 2319.374 kb on + strand, within PfGW456L13_2114at 2319.506 kb on + strand, within PfGW456L13_2114at 2319.507 kb on - strand, within PfGW456L13_2114at 2319.512 kb on + strand, within PfGW456L13_2114at 2319.512 kb on + strand, within PfGW456L13_2114at 2319.512 kb on + strand, within PfGW456L13_2114at 2319.513 kb on - strand, within PfGW456L13_2114at 2319.513 kb on - strand, within PfGW456L13_2114at 2319.554 kb on + strand, within PfGW456L13_2114at 2319.555 kb on - strand, within PfGW456L13_2114at 2319.575 kb on + strand, within PfGW456L13_2114at 2319.576 kb on - strand, within PfGW456L13_2114at 2319.576 kb on - strand, within PfGW456L13_2114at 2319.616 kb on + strand, within PfGW456L13_2114at 2319.686 kb on + strand, within PfGW456L13_2114at 2319.687 kb on - strand, within PfGW456L13_2114at 2319.862 kb on + strandat 2319.862 kb on + strandat 2319.920 kb on + strandat 2319.921 kb on - strandat 2319.948 kb on - strandat 2319.989 kb on - strandat 2320.078 kb on + strand, within PfGW456L13_2115at 2320.078 kb on + strand, within PfGW456L13_2115at 2320.078 kb on + strand, within PfGW456L13_2115at 2320.078 kb on + strand, within PfGW456L13_2115at 2320.078 kb on + strand, within PfGW456L13_2115at 2320.078 kb on + strand, within PfGW456L13_2115at 2320.078 kb on + strand, within PfGW456L13_2115at 2320.079 kb on - strand, within PfGW456L13_2115at 2320.079 kb on - strand, within PfGW456L13_2115at 2320.079 kb on - strand, within PfGW456L13_2115at 2320.079 kb on - strand, within PfGW456L13_2115at 2320.079 kb on - strand, within PfGW456L13_2115at 2320.079 kb on - strand, within PfGW456L13_2115at 2320.122 kb on + strand, within PfGW456L13_2115at 2320.123 kb on - strand, within PfGW456L13_2115at 2320.157 kb on + strand, within PfGW456L13_2115at 2320.157 kb on + strand, within PfGW456L13_2115at 2320.157 kb on + strand, within PfGW456L13_2115at 2320.158 kb on - strand, within PfGW456L13_2115at 2320.158 kb on - strand, within PfGW456L13_2115at 2320.200 kb on - strand, within PfGW456L13_2115at 2320.331 kb on + strand, within PfGW456L13_2115at 2320.332 kb on - strand, within PfGW456L13_2115at 2320.341 kb on - strand, within PfGW456L13_2115at 2320.433 kb on - strand, within PfGW456L13_2115at 2320.469 kb on + strand, within PfGW456L13_2115at 2320.469 kb on + strand, within PfGW456L13_2115at 2320.470 kb on - strand, within PfGW456L13_2115at 2320.481 kb on - strand, within PfGW456L13_2115at 2320.481 kb on - strand, within PfGW456L13_2115at 2320.509 kb on + strand, within PfGW456L13_2115at 2320.510 kb on - strand, within PfGW456L13_2115at 2320.598 kb on + strandat 2320.599 kb on - strandat 2320.599 kb on - strandat 2320.749 kb on + strand, within PfGW456L13_2116at 2320.750 kb on - strand, within PfGW456L13_2116at 2320.750 kb on - strand, within PfGW456L13_2116at 2320.752 kb on + strand, within PfGW456L13_2116at 2320.752 kb on + strand, within PfGW456L13_2116at 2320.753 kb on - strand, within PfGW456L13_2116at 2320.753 kb on - strand, within PfGW456L13_2116at 2320.802 kb on + strand, within PfGW456L13_2116at 2320.803 kb on - strand, within PfGW456L13_2116at 2320.827 kb on + strand, within PfGW456L13_2116at 2320.827 kb on + strand, within PfGW456L13_2116at 2320.827 kb on + strand, within PfGW456L13_2116at 2320.828 kb on - strand, within PfGW456L13_2116at 2320.828 kb on - strand, within PfGW456L13_2116at 2320.828 kb on - strand, within PfGW456L13_2116at 2320.828 kb on - strand, within PfGW456L13_2116at 2320.937 kb on + strand, within PfGW456L13_2116at 2320.937 kb on + strand, within PfGW456L13_2116at 2320.937 kb on + strand, within PfGW456L13_2116at 2321.025 kb on + strand, within PfGW456L13_2116at 2321.025 kb on + strand, within PfGW456L13_2116at 2321.025 kb on + strand, within PfGW456L13_2116at 2321.026 kb on - strand, within PfGW456L13_2116at 2321.026 kb on - strand, within PfGW456L13_2116at 2321.076 kb on + strand, within PfGW456L13_2116at 2321.076 kb on + strand, within PfGW456L13_2116

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,319,011 + PfGW456L13_2114 0.16 -0.2
2,319,011 + PfGW456L13_2114 0.16 -0.4
2,319,011 + PfGW456L13_2114 0.16 -0.1
2,319,241 + PfGW456L13_2114 0.40 -2.3
2,319,374 + PfGW456L13_2114 0.54 +0.2
2,319,506 + PfGW456L13_2114 0.67 +0.2
2,319,507 - PfGW456L13_2114 0.67 -2.3
2,319,512 + PfGW456L13_2114 0.68 -1.5
2,319,512 + PfGW456L13_2114 0.68 +2.1
2,319,512 + PfGW456L13_2114 0.68 +0.2
2,319,513 - PfGW456L13_2114 0.68 -2.0
2,319,513 - PfGW456L13_2114 0.68 +0.8
2,319,554 + PfGW456L13_2114 0.72 +0.1
2,319,555 - PfGW456L13_2114 0.72 -1.8
2,319,575 + PfGW456L13_2114 0.74 +0.2
2,319,576 - PfGW456L13_2114 0.74 -3.2
2,319,576 - PfGW456L13_2114 0.74 +0.3
2,319,616 + PfGW456L13_2114 0.79 +0.2
2,319,686 + PfGW456L13_2114 0.86 +0.4
2,319,687 - PfGW456L13_2114 0.86 +1.4
2,319,862 + -0.7
2,319,862 + -3.3
2,319,920 + +0.8
2,319,921 - -0.9
2,319,948 - +2.4
2,319,989 - +0.6
2,320,078 + PfGW456L13_2115 0.14 +3.1
2,320,078 + PfGW456L13_2115 0.14 -1.8
2,320,078 + PfGW456L13_2115 0.14 +0.5
2,320,078 + PfGW456L13_2115 0.14 +0.1
2,320,078 + PfGW456L13_2115 0.14 -1.1
2,320,078 + PfGW456L13_2115 0.14 -0.5
2,320,078 + PfGW456L13_2115 0.14 -0.1
2,320,079 - PfGW456L13_2115 0.14 -1.6
2,320,079 - PfGW456L13_2115 0.14 +1.8
2,320,079 - PfGW456L13_2115 0.14 -1.9
2,320,079 - PfGW456L13_2115 0.14 -1.1
2,320,079 - PfGW456L13_2115 0.14 +1.0
2,320,079 - PfGW456L13_2115 0.14 -3.6
2,320,122 + PfGW456L13_2115 0.21 +1.3
2,320,123 - PfGW456L13_2115 0.22 -1.7
2,320,157 + PfGW456L13_2115 0.27 -2.4
2,320,157 + PfGW456L13_2115 0.27 +1.7
2,320,157 + PfGW456L13_2115 0.27 -1.2
2,320,158 - PfGW456L13_2115 0.27 -0.6
2,320,158 - PfGW456L13_2115 0.27 +0.3
2,320,200 - PfGW456L13_2115 0.34 -1.4
2,320,331 + PfGW456L13_2115 0.56 -0.3
2,320,332 - PfGW456L13_2115 0.56 +0.6
2,320,341 - PfGW456L13_2115 0.57 +0.6
2,320,433 - PfGW456L13_2115 0.72 +0.5
2,320,469 + PfGW456L13_2115 0.78 +0.3
2,320,469 + PfGW456L13_2115 0.78 +0.5
2,320,470 - PfGW456L13_2115 0.78 +0.5
2,320,481 - PfGW456L13_2115 0.80 +0.3
2,320,481 - PfGW456L13_2115 0.80 -0.6
2,320,509 + PfGW456L13_2115 0.85 +0.4
2,320,510 - PfGW456L13_2115 0.85 +0.6
2,320,598 + -2.1
2,320,599 - +0.4
2,320,599 - +1.6
2,320,749 + PfGW456L13_2116 0.24 +1.4
2,320,750 - PfGW456L13_2116 0.24 +0.8
2,320,750 - PfGW456L13_2116 0.24 -0.6
2,320,752 + PfGW456L13_2116 0.24 +0.4
2,320,752 + PfGW456L13_2116 0.24 +1.3
2,320,753 - PfGW456L13_2116 0.24 +1.4
2,320,753 - PfGW456L13_2116 0.24 -0.9
2,320,802 + PfGW456L13_2116 0.33 +1.1
2,320,803 - PfGW456L13_2116 0.33 -1.5
2,320,827 + PfGW456L13_2116 0.37 +1.8
2,320,827 + PfGW456L13_2116 0.37 +1.1
2,320,827 + PfGW456L13_2116 0.37 -2.2
2,320,828 - PfGW456L13_2116 0.38 -1.7
2,320,828 - PfGW456L13_2116 0.38 +1.0
2,320,828 - PfGW456L13_2116 0.38 -0.1
2,320,828 - PfGW456L13_2116 0.38 -0.5
2,320,937 + PfGW456L13_2116 0.57 +0.5
2,320,937 + PfGW456L13_2116 0.57 +0.9
2,320,937 + PfGW456L13_2116 0.57 -0.0
2,321,025 + PfGW456L13_2116 0.73 +0.5
2,321,025 + PfGW456L13_2116 0.73 -2.9
2,321,025 + PfGW456L13_2116 0.73 -2.9
2,321,026 - PfGW456L13_2116 0.73 -0.2
2,321,026 - PfGW456L13_2116 0.73 -1.5
2,321,076 + PfGW456L13_2116 0.82 +1.4
2,321,076 + PfGW456L13_2116 0.82 -1.5

Or see this region's nucleotide sequence