Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1560

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1558 and PfGW456L13_1559 are separated by 169 nucleotidesPfGW456L13_1559 and PfGW456L13_1560 are separated by 12 nucleotidesPfGW456L13_1560 and PfGW456L13_1561 are separated by 72 nucleotides PfGW456L13_1558 - Methyl-accepting chemotaxis protein, at 1,720,169 to 1,721,485 _1558 PfGW456L13_1559 - NAD(P)H-flavin oxidoreductase, at 1,721,655 to 1,722,254 _1559 PfGW456L13_1560 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 1,722,267 to 1,722,638 _1560 PfGW456L13_1561 - Transcriptional regulator, AraC family, at 1,722,711 to 1,723,553 _1561 Position (kb) 1722 1723Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1721.405 kb on - strandat 1721.609 kb on + strandat 1721.609 kb on + strandat 1721.610 kb on - strandat 1721.621 kb on - strandat 1721.759 kb on + strand, within PfGW456L13_1559at 1721.759 kb on + strand, within PfGW456L13_1559at 1721.760 kb on - strand, within PfGW456L13_1559at 1721.760 kb on - strand, within PfGW456L13_1559at 1721.976 kb on + strand, within PfGW456L13_1559at 1721.983 kb on + strand, within PfGW456L13_1559at 1721.983 kb on + strand, within PfGW456L13_1559at 1721.984 kb on - strand, within PfGW456L13_1559at 1721.984 kb on - strand, within PfGW456L13_1559at 1721.984 kb on - strand, within PfGW456L13_1559at 1722.084 kb on + strand, within PfGW456L13_1559at 1722.354 kb on + strand, within PfGW456L13_1560at 1722.354 kb on + strand, within PfGW456L13_1560at 1722.355 kb on - strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.403 kb on + strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.404 kb on - strand, within PfGW456L13_1560at 1722.449 kb on + strand, within PfGW456L13_1560at 1722.453 kb on + strand, within PfGW456L13_1560at 1722.453 kb on + strand, within PfGW456L13_1560at 1722.453 kb on + strand, within PfGW456L13_1560at 1722.454 kb on - strand, within PfGW456L13_1560at 1722.454 kb on - strand, within PfGW456L13_1560at 1722.454 kb on - strand, within PfGW456L13_1560at 1722.544 kb on + strand, within PfGW456L13_1560at 1722.544 kb on + strand, within PfGW456L13_1560at 1722.626 kb on - strandat 1722.754 kb on + strandat 1722.755 kb on - strandat 1722.755 kb on - strandat 1722.755 kb on - strandat 1722.880 kb on + strand, within PfGW456L13_1561at 1723.000 kb on + strand, within PfGW456L13_1561at 1723.000 kb on + strand, within PfGW456L13_1561at 1723.000 kb on + strand, within PfGW456L13_1561at 1723.000 kb on + strand, within PfGW456L13_1561at 1723.001 kb on - strand, within PfGW456L13_1561at 1723.027 kb on + strand, within PfGW456L13_1561at 1723.027 kb on + strand, within PfGW456L13_1561at 1723.027 kb on + strand, within PfGW456L13_1561at 1723.028 kb on - strand, within PfGW456L13_1561at 1723.028 kb on - strand, within PfGW456L13_1561at 1723.249 kb on + strand, within PfGW456L13_1561at 1723.249 kb on + strand, within PfGW456L13_1561at 1723.249 kb on + strand, within PfGW456L13_1561at 1723.249 kb on + strand, within PfGW456L13_1561at 1723.249 kb on + strand, within PfGW456L13_1561at 1723.249 kb on + strand, within PfGW456L13_1561at 1723.249 kb on + strand, within PfGW456L13_1561at 1723.249 kb on + strand, within PfGW456L13_1561at 1723.250 kb on - strand, within PfGW456L13_1561at 1723.250 kb on - strand, within PfGW456L13_1561at 1723.250 kb on - strand, within PfGW456L13_1561at 1723.250 kb on - strand, within PfGW456L13_1561at 1723.402 kb on + strand, within PfGW456L13_1561at 1723.402 kb on + strand, within PfGW456L13_1561at 1723.402 kb on + strand, within PfGW456L13_1561at 1723.402 kb on + strand, within PfGW456L13_1561at 1723.402 kb on + strand, within PfGW456L13_1561at 1723.402 kb on + strand, within PfGW456L13_1561at 1723.402 kb on + strand, within PfGW456L13_1561at 1723.403 kb on - strand, within PfGW456L13_1561at 1723.403 kb on - strand, within PfGW456L13_1561at 1723.403 kb on - strand, within PfGW456L13_1561at 1723.403 kb on - strand, within PfGW456L13_1561at 1723.403 kb on - strand, within PfGW456L13_1561at 1723.403 kb on - strand, within PfGW456L13_1561at 1723.403 kb on - strand, within PfGW456L13_1561at 1723.403 kb on - strand, within PfGW456L13_1561at 1723.462 kb on - strand, within PfGW456L13_1561at 1723.510 kb on + strandat 1723.511 kb on - strandat 1723.511 kb on - strandat 1723.511 kb on - strandat 1723.511 kb on - strandat 1723.511 kb on - strandat 1723.511 kb on - strandat 1723.511 kb on - strandat 1723.601 kb on + strandat 1723.601 kb on + strandat 1723.601 kb on + strandat 1723.602 kb on - strandat 1723.602 kb on - strandat 1723.602 kb on - strandat 1723.602 kb on - strandat 1723.602 kb on - strandat 1723.602 kb on - strandat 1723.602 kb on - strandat 1723.624 kb on + strandat 1723.624 kb on + strandat 1723.625 kb on - strandat 1723.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,721,405 - +0.6
1,721,609 + +0.9
1,721,609 + +1.1
1,721,610 - -1.4
1,721,621 - +0.7
1,721,759 + PfGW456L13_1559 0.17 +0.5
1,721,759 + PfGW456L13_1559 0.17 +1.0
1,721,760 - PfGW456L13_1559 0.17 -0.1
1,721,760 - PfGW456L13_1559 0.17 -3.0
1,721,976 + PfGW456L13_1559 0.54 -2.1
1,721,983 + PfGW456L13_1559 0.55 +0.6
1,721,983 + PfGW456L13_1559 0.55 -0.4
1,721,984 - PfGW456L13_1559 0.55 -0.2
1,721,984 - PfGW456L13_1559 0.55 +1.0
1,721,984 - PfGW456L13_1559 0.55 -2.9
1,722,084 + PfGW456L13_1559 0.71 -2.7
1,722,354 + PfGW456L13_1560 0.23 +2.1
1,722,354 + PfGW456L13_1560 0.23 -1.2
1,722,355 - PfGW456L13_1560 0.24 +0.1
1,722,403 + PfGW456L13_1560 0.37 +0.4
1,722,403 + PfGW456L13_1560 0.37 -0.1
1,722,403 + PfGW456L13_1560 0.37 -1.6
1,722,403 + PfGW456L13_1560 0.37 -0.8
1,722,403 + PfGW456L13_1560 0.37 -1.1
1,722,403 + PfGW456L13_1560 0.37 -0.6
1,722,403 + PfGW456L13_1560 0.37 +0.9
1,722,403 + PfGW456L13_1560 0.37 +0.5
1,722,403 + PfGW456L13_1560 0.37 +0.8
1,722,403 + PfGW456L13_1560 0.37 -1.0
1,722,403 + PfGW456L13_1560 0.37 +1.3
1,722,403 + PfGW456L13_1560 0.37 -1.4
1,722,403 + PfGW456L13_1560 0.37 -0.2
1,722,403 + PfGW456L13_1560 0.37 -1.8
1,722,403 + PfGW456L13_1560 0.37 -1.2
1,722,403 + PfGW456L13_1560 0.37 -0.6
1,722,403 + PfGW456L13_1560 0.37 -2.7
1,722,403 + PfGW456L13_1560 0.37 +1.4
1,722,403 + PfGW456L13_1560 0.37 +0.8
1,722,403 + PfGW456L13_1560 0.37 -0.1
1,722,403 + PfGW456L13_1560 0.37 +1.1
1,722,403 + PfGW456L13_1560 0.37 -1.6
1,722,403 + PfGW456L13_1560 0.37 +1.0
1,722,403 + PfGW456L13_1560 0.37 +0.8
1,722,403 + PfGW456L13_1560 0.37 +0.1
1,722,403 + PfGW456L13_1560 0.37 -0.4
1,722,403 + PfGW456L13_1560 0.37 -3.2
1,722,403 + PfGW456L13_1560 0.37 -3.6
1,722,403 + PfGW456L13_1560 0.37 -1.9
1,722,403 + PfGW456L13_1560 0.37 -0.1
1,722,403 + PfGW456L13_1560 0.37 -0.8
1,722,404 - PfGW456L13_1560 0.37 -0.5
1,722,404 - PfGW456L13_1560 0.37 +0.9
1,722,404 - PfGW456L13_1560 0.37 +2.1
1,722,404 - PfGW456L13_1560 0.37 +0.1
1,722,404 - PfGW456L13_1560 0.37 +0.2
1,722,404 - PfGW456L13_1560 0.37 -0.3
1,722,404 - PfGW456L13_1560 0.37 -1.6
1,722,404 - PfGW456L13_1560 0.37 -0.3
1,722,404 - PfGW456L13_1560 0.37 -1.2
1,722,404 - PfGW456L13_1560 0.37 +0.0
1,722,404 - PfGW456L13_1560 0.37 +1.0
1,722,404 - PfGW456L13_1560 0.37 -1.1
1,722,404 - PfGW456L13_1560 0.37 +1.4
1,722,404 - PfGW456L13_1560 0.37 -2.5
1,722,404 - PfGW456L13_1560 0.37 +1.5
1,722,404 - PfGW456L13_1560 0.37 +0.2
1,722,404 - PfGW456L13_1560 0.37 +1.0
1,722,404 - PfGW456L13_1560 0.37 -0.3
1,722,404 - PfGW456L13_1560 0.37 -0.0
1,722,404 - PfGW456L13_1560 0.37 +0.7
1,722,404 - PfGW456L13_1560 0.37 -0.4
1,722,404 - PfGW456L13_1560 0.37 +1.3
1,722,404 - PfGW456L13_1560 0.37 +1.0
1,722,404 - PfGW456L13_1560 0.37 -0.7
1,722,404 - PfGW456L13_1560 0.37 +1.8
1,722,404 - PfGW456L13_1560 0.37 -0.5
1,722,404 - PfGW456L13_1560 0.37 +0.8
1,722,404 - PfGW456L13_1560 0.37 +1.4
1,722,404 - PfGW456L13_1560 0.37 +0.0
1,722,404 - PfGW456L13_1560 0.37 +0.0
1,722,404 - PfGW456L13_1560 0.37 +0.2
1,722,404 - PfGW456L13_1560 0.37 -0.9
1,722,404 - PfGW456L13_1560 0.37 -1.6
1,722,404 - PfGW456L13_1560 0.37 -0.7
1,722,449 + PfGW456L13_1560 0.49 -0.2
1,722,453 + PfGW456L13_1560 0.50 -1.2
1,722,453 + PfGW456L13_1560 0.50 +2.8
1,722,453 + PfGW456L13_1560 0.50 -0.0
1,722,454 - PfGW456L13_1560 0.50 +1.5
1,722,454 - PfGW456L13_1560 0.50 +1.0
1,722,454 - PfGW456L13_1560 0.50 -3.9
1,722,544 + PfGW456L13_1560 0.74 +1.4
1,722,544 + PfGW456L13_1560 0.74 -0.5
1,722,626 - +1.7
1,722,754 + -1.7
1,722,755 - -0.2
1,722,755 - +0.5
1,722,755 - +1.5
1,722,880 + PfGW456L13_1561 0.20 -0.8
1,723,000 + PfGW456L13_1561 0.34 +1.2
1,723,000 + PfGW456L13_1561 0.34 -3.4
1,723,000 + PfGW456L13_1561 0.34 -0.6
1,723,000 + PfGW456L13_1561 0.34 -0.7
1,723,001 - PfGW456L13_1561 0.34 +0.3
1,723,027 + PfGW456L13_1561 0.37 +0.7
1,723,027 + PfGW456L13_1561 0.37 -2.2
1,723,027 + PfGW456L13_1561 0.37 -2.8
1,723,028 - PfGW456L13_1561 0.38 -2.5
1,723,028 - PfGW456L13_1561 0.38 +1.0
1,723,249 + PfGW456L13_1561 0.64 +1.2
1,723,249 + PfGW456L13_1561 0.64 +1.3
1,723,249 + PfGW456L13_1561 0.64 +1.4
1,723,249 + PfGW456L13_1561 0.64 +0.7
1,723,249 + PfGW456L13_1561 0.64 -1.4
1,723,249 + PfGW456L13_1561 0.64 -0.2
1,723,249 + PfGW456L13_1561 0.64 -0.7
1,723,249 + PfGW456L13_1561 0.64 +0.0
1,723,250 - PfGW456L13_1561 0.64 -1.0
1,723,250 - PfGW456L13_1561 0.64 +0.9
1,723,250 - PfGW456L13_1561 0.64 +0.7
1,723,250 - PfGW456L13_1561 0.64 -1.8
1,723,402 + PfGW456L13_1561 0.82 +0.1
1,723,402 + PfGW456L13_1561 0.82 +0.8
1,723,402 + PfGW456L13_1561 0.82 +0.5
1,723,402 + PfGW456L13_1561 0.82 +1.6
1,723,402 + PfGW456L13_1561 0.82 +0.0
1,723,402 + PfGW456L13_1561 0.82 -1.9
1,723,402 + PfGW456L13_1561 0.82 +0.1
1,723,403 - PfGW456L13_1561 0.82 -0.1
1,723,403 - PfGW456L13_1561 0.82 +0.7
1,723,403 - PfGW456L13_1561 0.82 +1.4
1,723,403 - PfGW456L13_1561 0.82 +1.1
1,723,403 - PfGW456L13_1561 0.82 -1.9
1,723,403 - PfGW456L13_1561 0.82 +1.2
1,723,403 - PfGW456L13_1561 0.82 -1.8
1,723,403 - PfGW456L13_1561 0.82 -0.2
1,723,462 - PfGW456L13_1561 0.89 -1.7
1,723,510 + +0.4
1,723,511 - +1.3
1,723,511 - +0.5
1,723,511 - +2.3
1,723,511 - -1.5
1,723,511 - -3.4
1,723,511 - +0.8
1,723,511 - +2.5
1,723,601 + -0.3
1,723,601 + +0.2
1,723,601 + -0.2
1,723,602 - -0.5
1,723,602 - -1.5
1,723,602 - -2.1
1,723,602 - -2.3
1,723,602 - +1.3
1,723,602 - +1.3
1,723,602 - -1.4
1,723,624 + -2.2
1,723,624 + +1.7
1,723,625 - -0.7
1,723,625 - +1.7

Or see this region's nucleotide sequence