Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1493

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1492 and PfGW456L13_1493 are separated by 193 nucleotidesPfGW456L13_1493 and PfGW456L13_1494 overlap by 4 nucleotides PfGW456L13_1492 - Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB), at 1,641,361 to 1,642,383 _1492 PfGW456L13_1493 - Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70), at 1,642,577 to 1,643,497 _1493 PfGW456L13_1494 - COG1496: Uncharacterized conserved protein, at 1,643,494 to 1,644,213 _1494 Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1641.629 kb on - strand, within PfGW456L13_1492at 1642.435 kb on - strandat 1642.525 kb on + strandat 1642.525 kb on + strandat 1642.794 kb on - strand, within PfGW456L13_1493at 1643.008 kb on + strand, within PfGW456L13_1493at 1643.892 kb on + strand, within PfGW456L13_1494at 1643.893 kb on - strand, within PfGW456L13_1494at 1643.927 kb on + strand, within PfGW456L13_1494at 1643.927 kb on + strand, within PfGW456L13_1494at 1643.927 kb on + strand, within PfGW456L13_1494at 1643.927 kb on + strand, within PfGW456L13_1494at 1643.928 kb on - strand, within PfGW456L13_1494at 1643.928 kb on - strand, within PfGW456L13_1494at 1643.928 kb on - strand, within PfGW456L13_1494at 1643.928 kb on - strand, within PfGW456L13_1494at 1643.933 kb on + strand, within PfGW456L13_1494at 1643.934 kb on - strand, within PfGW456L13_1494at 1643.934 kb on - strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.070 kb on + strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strandat 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strandat 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.071 kb on - strand, within PfGW456L13_1494at 1644.072 kb on + strand, within PfGW456L13_1494at 1644.072 kb on + strand, within PfGW456L13_1494at 1644.072 kb on + strand, within PfGW456L13_1494at 1644.072 kb on + strand, within PfGW456L13_1494at 1644.072 kb on + strand, within PfGW456L13_1494at 1644.073 kb on - strand, within PfGW456L13_1494at 1644.073 kb on - strand, within PfGW456L13_1494at 1644.073 kb on - strand, within PfGW456L13_1494at 1644.073 kb on - strand, within PfGW456L13_1494at 1644.073 kb on - strand, within PfGW456L13_1494at 1644.073 kb on - strand, within PfGW456L13_1494at 1644.073 kb on - strand, within PfGW456L13_1494at 1644.073 kb on - strand, within PfGW456L13_1494at 1644.073 kb on - strand, within PfGW456L13_1494at 1644.118 kb on + strand, within PfGW456L13_1494at 1644.119 kb on - strand, within PfGW456L13_1494at 1644.230 kb on + strandat 1644.230 kb on + strandat 1644.230 kb on + strandat 1644.230 kb on + strandat 1644.231 kb on - strandat 1644.231 kb on - strandat 1644.295 kb on + strandat 1644.295 kb on + strandat 1644.296 kb on - strandat 1644.351 kb on + strandat 1644.351 kb on + strandat 1644.351 kb on + strandat 1644.352 kb on - strandat 1644.352 kb on - strandat 1644.352 kb on - strandat 1644.352 kb on - strandat 1644.352 kb on - strandat 1644.352 kb on - strandat 1644.352 kb on - strandat 1644.352 kb on - strandat 1644.357 kb on + strandat 1644.358 kb on - strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.436 kb on + strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.437 kb on - strandat 1644.444 kb on + strandat 1644.444 kb on + strandat 1644.444 kb on + strandat 1644.444 kb on + strandat 1644.445 kb on - strandat 1644.475 kb on + strandat 1644.475 kb on + strandat 1644.475 kb on + strandat 1644.475 kb on + strandat 1644.475 kb on + strandat 1644.476 kb on - strandat 1644.476 kb on - strandat 1644.476 kb on - strandat 1644.476 kb on - strandat 1644.477 kb on + strandat 1644.477 kb on + strandat 1644.477 kb on + strandat 1644.477 kb on + strandat 1644.477 kb on + strandat 1644.478 kb on - strandat 1644.478 kb on - strandat 1644.478 kb on - strandat 1644.478 kb on - strandat 1644.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,641,629 - PfGW456L13_1492 0.26 -2.7
1,642,435 - -0.6
1,642,525 + +1.2
1,642,525 + -0.2
1,642,794 - PfGW456L13_1493 0.24 -1.8
1,643,008 + PfGW456L13_1493 0.47 +1.2
1,643,892 + PfGW456L13_1494 0.55 +0.3
1,643,893 - PfGW456L13_1494 0.55 -0.3
1,643,927 + PfGW456L13_1494 0.60 +1.2
1,643,927 + PfGW456L13_1494 0.60 +3.1
1,643,927 + PfGW456L13_1494 0.60 +0.1
1,643,927 + PfGW456L13_1494 0.60 -1.0
1,643,928 - PfGW456L13_1494 0.60 -2.4
1,643,928 - PfGW456L13_1494 0.60 +2.1
1,643,928 - PfGW456L13_1494 0.60 -1.5
1,643,928 - PfGW456L13_1494 0.60 -3.4
1,643,933 + PfGW456L13_1494 0.61 -4.0
1,643,934 - PfGW456L13_1494 0.61 -3.0
1,643,934 - PfGW456L13_1494 0.61 +0.7
1,644,070 + PfGW456L13_1494 0.80 +0.5
1,644,070 + PfGW456L13_1494 0.80 -3.2
1,644,070 + PfGW456L13_1494 0.80 +1.3
1,644,070 + PfGW456L13_1494 0.80 -0.9
1,644,070 + PfGW456L13_1494 0.80 -2.0
1,644,070 + PfGW456L13_1494 0.80 +2.4
1,644,070 + PfGW456L13_1494 0.80 -0.1
1,644,070 + PfGW456L13_1494 0.80 -1.3
1,644,070 + PfGW456L13_1494 0.80 -1.9
1,644,070 + PfGW456L13_1494 0.80 -1.6
1,644,070 + PfGW456L13_1494 0.80 +2.3
1,644,070 + PfGW456L13_1494 0.80 -1.5
1,644,070 + PfGW456L13_1494 0.80 +0.5
1,644,070 + PfGW456L13_1494 0.80 +2.0
1,644,070 + PfGW456L13_1494 0.80 -2.0
1,644,070 + PfGW456L13_1494 0.80 -0.3
1,644,070 + PfGW456L13_1494 0.80 -0.1
1,644,070 + PfGW456L13_1494 0.80 +0.2
1,644,070 + PfGW456L13_1494 0.80 -1.6
1,644,070 + PfGW456L13_1494 0.80 -0.4
1,644,071 - PfGW456L13_1494 0.80 +0.0
1,644,071 - PfGW456L13_1494 0.80 +1.7
1,644,071 - PfGW456L13_1494 0.80 -2.2
1,644,071 - PfGW456L13_1494 0.80 -0.1
1,644,071 - PfGW456L13_1494 0.80 +0.6
1,644,071 - PfGW456L13_1494 0.80 +0.4
1,644,071 - PfGW456L13_1494 0.80 -1.4
1,644,071 - PfGW456L13_1494 0.80 +1.6
1,644,071 - PfGW456L13_1494 0.80 -0.3
1,644,071 - PfGW456L13_1494 0.80 +1.9
1,644,071 - PfGW456L13_1494 0.80 +0.7
1,644,071 - PfGW456L13_1494 0.80 +0.7
1,644,071 - PfGW456L13_1494 0.80 -1.3
1,644,071 - PfGW456L13_1494 0.80 +0.2
1,644,071 - PfGW456L13_1494 0.80 +1.4
1,644,071 - PfGW456L13_1494 0.80 -2.1
1,644,071 - +1.4
1,644,071 - PfGW456L13_1494 0.80 -0.5
1,644,071 - PfGW456L13_1494 0.80 +0.8
1,644,071 - PfGW456L13_1494 0.80 +3.3
1,644,071 - PfGW456L13_1494 0.80 -0.8
1,644,071 - PfGW456L13_1494 0.80 -1.2
1,644,071 - PfGW456L13_1494 0.80 -1.2
1,644,071 - +1.4
1,644,071 - PfGW456L13_1494 0.80 +0.2
1,644,071 - PfGW456L13_1494 0.80 +0.5
1,644,071 - PfGW456L13_1494 0.80 +0.4
1,644,071 - PfGW456L13_1494 0.80 -1.0
1,644,071 - PfGW456L13_1494 0.80 +0.7
1,644,071 - PfGW456L13_1494 0.80 -1.3
1,644,071 - PfGW456L13_1494 0.80 -2.5
1,644,071 - PfGW456L13_1494 0.80 +1.7
1,644,071 - PfGW456L13_1494 0.80 -0.1
1,644,072 + PfGW456L13_1494 0.80 -1.2
1,644,072 + PfGW456L13_1494 0.80 -1.8
1,644,072 + PfGW456L13_1494 0.80 +1.5
1,644,072 + PfGW456L13_1494 0.80 -1.5
1,644,072 + PfGW456L13_1494 0.80 -1.7
1,644,073 - PfGW456L13_1494 0.80 +2.0
1,644,073 - PfGW456L13_1494 0.80 +0.7
1,644,073 - PfGW456L13_1494 0.80 +1.6
1,644,073 - PfGW456L13_1494 0.80 +0.4
1,644,073 - PfGW456L13_1494 0.80 -0.9
1,644,073 - PfGW456L13_1494 0.80 +2.4
1,644,073 - PfGW456L13_1494 0.80 -0.9
1,644,073 - PfGW456L13_1494 0.80 -1.4
1,644,073 - PfGW456L13_1494 0.80 -2.4
1,644,118 + PfGW456L13_1494 0.87 +1.2
1,644,119 - PfGW456L13_1494 0.87 -0.0
1,644,230 + -3.2
1,644,230 + -2.2
1,644,230 + +0.2
1,644,230 + +1.6
1,644,231 - -1.2
1,644,231 - +0.1
1,644,295 + -2.0
1,644,295 + +1.7
1,644,296 - +0.2
1,644,351 + +0.2
1,644,351 + -0.5
1,644,351 + +0.2
1,644,352 - -0.4
1,644,352 - +0.4
1,644,352 - -0.9
1,644,352 - +0.8
1,644,352 - +2.0
1,644,352 - -1.0
1,644,352 - +0.3
1,644,352 - -1.5
1,644,357 + +1.3
1,644,358 - +0.3
1,644,436 + -0.2
1,644,436 + +0.8
1,644,436 + +0.6
1,644,436 + +1.0
1,644,436 + -1.9
1,644,436 + +0.8
1,644,436 + +0.4
1,644,436 + +0.4
1,644,436 + +1.7
1,644,436 + +1.2
1,644,436 + -3.4
1,644,436 + +0.6
1,644,436 + -2.8
1,644,436 + -0.5
1,644,436 + -0.5
1,644,436 + +0.1
1,644,436 + -1.2
1,644,436 + -2.2
1,644,437 - -0.0
1,644,437 - +1.5
1,644,437 - -2.4
1,644,437 - -0.6
1,644,437 - +1.0
1,644,437 - -2.4
1,644,437 - +1.0
1,644,437 - -1.3
1,644,437 - +1.9
1,644,437 - -0.2
1,644,437 - -2.8
1,644,437 - +1.6
1,644,444 + +3.1
1,644,444 + +0.4
1,644,444 + -1.1
1,644,444 + -3.3
1,644,445 - +2.6
1,644,475 + +0.6
1,644,475 + -0.2
1,644,475 + +3.7
1,644,475 + -0.5
1,644,475 + -1.9
1,644,476 - +0.6
1,644,476 - +2.0
1,644,476 - -2.6
1,644,476 - +1.0
1,644,477 + +0.4
1,644,477 + +1.1
1,644,477 + -1.2
1,644,477 + -0.3
1,644,477 + -2.4
1,644,478 - +0.1
1,644,478 - +0.0
1,644,478 - +0.1
1,644,478 - +0.8
1,644,478 - -0.8

Or see this region's nucleotide sequence