Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1443

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1442 and PfGW456L13_1443 are separated by 115 nucleotidesPfGW456L13_1443 and PfGW456L13_1444 are separated by 160 nucleotides PfGW456L13_1442 - DNA repair protein RadA, at 1,591,226 to 1,592,593 _1442 PfGW456L13_1443 - FIG00954896: hypothetical protein, at 1,592,709 to 1,593,077 _1443 PfGW456L13_1444 - Carbon starvation protein A, at 1,593,238 to 1,595,304 _1444 Position (kb) 1592 1593 1594Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1591.937 kb on + strand, within PfGW456L13_1442at 1591.937 kb on + strand, within PfGW456L13_1442at 1592.104 kb on + strand, within PfGW456L13_1442at 1592.155 kb on - strand, within PfGW456L13_1442at 1592.155 kb on - strand, within PfGW456L13_1442at 1592.155 kb on - strand, within PfGW456L13_1442at 1592.591 kb on + strandat 1592.618 kb on + strandat 1592.619 kb on - strandat 1592.710 kb on + strandat 1592.710 kb on + strandat 1592.710 kb on + strandat 1593.038 kb on + strand, within PfGW456L13_1443at 1593.038 kb on + strand, within PfGW456L13_1443at 1593.038 kb on + strand, within PfGW456L13_1443at 1593.039 kb on - strand, within PfGW456L13_1443at 1593.039 kb on - strand, within PfGW456L13_1443at 1593.039 kb on - strand, within PfGW456L13_1443at 1593.039 kb on - strand, within PfGW456L13_1443at 1593.039 kb on - strand, within PfGW456L13_1443at 1593.039 kb on - strand, within PfGW456L13_1443at 1593.067 kb on + strandat 1593.097 kb on + strandat 1593.097 kb on + strandat 1593.097 kb on + strandat 1593.097 kb on + strandat 1593.098 kb on - strandat 1593.098 kb on - strandat 1593.106 kb on + strandat 1593.106 kb on + strandat 1593.107 kb on - strandat 1593.107 kb on - strandat 1593.107 kb on - strandat 1593.108 kb on + strandat 1593.108 kb on + strandat 1593.108 kb on + strandat 1593.108 kb on + strandat 1593.109 kb on - strandat 1593.189 kb on + strandat 1593.189 kb on + strandat 1593.189 kb on + strandat 1593.190 kb on - strandat 1593.190 kb on - strandat 1593.190 kb on - strandat 1593.246 kb on + strandat 1593.246 kb on + strandat 1593.247 kb on - strandat 1593.249 kb on + strandat 1593.249 kb on + strandat 1593.249 kb on + strandat 1593.250 kb on - strandat 1593.250 kb on - strandat 1593.250 kb on - strandat 1593.250 kb on - strandat 1593.252 kb on + strandat 1593.253 kb on - strandat 1593.293 kb on + strandat 1593.293 kb on + strandat 1593.294 kb on - strandat 1593.294 kb on - strandat 1593.294 kb on - strandat 1593.323 kb on + strandat 1593.379 kb on + strandat 1593.379 kb on + strandat 1593.379 kb on + strandat 1593.379 kb on + strandat 1593.379 kb on + strandat 1593.379 kb on + strandat 1593.380 kb on - strandat 1593.380 kb on - strandat 1593.398 kb on - strandat 1593.398 kb on - strandat 1593.400 kb on + strandat 1593.400 kb on + strandat 1593.400 kb on + strandat 1593.400 kb on + strandat 1593.401 kb on - strandat 1593.401 kb on - strandat 1593.401 kb on - strandat 1593.401 kb on - strandat 1593.417 kb on + strandat 1593.484 kb on + strand, within PfGW456L13_1444at 1593.484 kb on + strand, within PfGW456L13_1444at 1593.484 kb on + strand, within PfGW456L13_1444at 1593.484 kb on + strand, within PfGW456L13_1444at 1593.485 kb on - strand, within PfGW456L13_1444at 1593.485 kb on - strand, within PfGW456L13_1444at 1593.485 kb on - strand, within PfGW456L13_1444at 1593.485 kb on - strand, within PfGW456L13_1444at 1593.485 kb on - strand, within PfGW456L13_1444at 1593.583 kb on + strand, within PfGW456L13_1444at 1593.657 kb on + strand, within PfGW456L13_1444at 1593.658 kb on - strand, within PfGW456L13_1444at 1593.658 kb on - strand, within PfGW456L13_1444at 1593.658 kb on - strand, within PfGW456L13_1444at 1593.658 kb on - strand, within PfGW456L13_1444at 1593.658 kb on - strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.871 kb on + strand, within PfGW456L13_1444at 1593.872 kb on - strand, within PfGW456L13_1444at 1593.872 kb on - strand, within PfGW456L13_1444at 1593.872 kb on - strand, within PfGW456L13_1444at 1593.872 kb on - strand, within PfGW456L13_1444at 1593.872 kb on - strand, within PfGW456L13_1444at 1593.872 kb on - strand, within PfGW456L13_1444at 1593.872 kb on - strand, within PfGW456L13_1444at 1593.872 kb on - strand, within PfGW456L13_1444at 1593.872 kb on - strand, within PfGW456L13_1444at 1593.872 kb on - strand, within PfGW456L13_1444at 1593.880 kb on + strand, within PfGW456L13_1444at 1593.880 kb on + strand, within PfGW456L13_1444at 1593.880 kb on + strand, within PfGW456L13_1444at 1593.880 kb on + strand, within PfGW456L13_1444at 1593.880 kb on + strand, within PfGW456L13_1444at 1593.881 kb on - strand, within PfGW456L13_1444at 1593.881 kb on - strand, within PfGW456L13_1444at 1593.881 kb on - strand, within PfGW456L13_1444at 1593.881 kb on - strand, within PfGW456L13_1444at 1593.923 kb on + strand, within PfGW456L13_1444at 1593.924 kb on - strand, within PfGW456L13_1444at 1593.924 kb on - strand, within PfGW456L13_1444at 1593.924 kb on - strand, within PfGW456L13_1444at 1593.999 kb on + strand, within PfGW456L13_1444at 1594.053 kb on - strand, within PfGW456L13_1444

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,591,937 + PfGW456L13_1442 0.52 -0.7
1,591,937 + PfGW456L13_1442 0.52 +1.2
1,592,104 + PfGW456L13_1442 0.64 +0.8
1,592,155 - PfGW456L13_1442 0.68 +0.8
1,592,155 - PfGW456L13_1442 0.68 +0.1
1,592,155 - PfGW456L13_1442 0.68 +0.8
1,592,591 + -1.2
1,592,618 + -0.4
1,592,619 - -1.0
1,592,710 + +1.5
1,592,710 + +0.3
1,592,710 + +1.3
1,593,038 + PfGW456L13_1443 0.89 -0.2
1,593,038 + PfGW456L13_1443 0.89 -0.3
1,593,038 + PfGW456L13_1443 0.89 +0.4
1,593,039 - PfGW456L13_1443 0.89 -0.0
1,593,039 - PfGW456L13_1443 0.89 -0.5
1,593,039 - PfGW456L13_1443 0.89 +2.0
1,593,039 - PfGW456L13_1443 0.89 +1.4
1,593,039 - PfGW456L13_1443 0.89 +2.3
1,593,039 - PfGW456L13_1443 0.89 +0.3
1,593,067 + +0.5
1,593,097 + -0.4
1,593,097 + +0.7
1,593,097 + -0.8
1,593,097 + +1.3
1,593,098 - +0.4
1,593,098 - -3.1
1,593,106 + +0.8
1,593,106 + +0.7
1,593,107 - -0.2
1,593,107 - +1.4
1,593,107 - +0.1
1,593,108 + +0.6
1,593,108 + -1.8
1,593,108 + +0.3
1,593,108 + -3.9
1,593,109 - +2.5
1,593,189 + -1.2
1,593,189 + +1.1
1,593,189 + -0.0
1,593,190 - -0.7
1,593,190 - +0.1
1,593,190 - +2.5
1,593,246 + +0.2
1,593,246 + -3.6
1,593,247 - -0.3
1,593,249 + +0.4
1,593,249 + +1.6
1,593,249 + +0.4
1,593,250 - +2.7
1,593,250 - -0.1
1,593,250 - +1.6
1,593,250 - -3.0
1,593,252 + +0.1
1,593,253 - +0.2
1,593,293 + -1.9
1,593,293 + -1.4
1,593,294 - +0.8
1,593,294 - +0.6
1,593,294 - +0.6
1,593,323 + +1.1
1,593,379 + -3.4
1,593,379 + -2.8
1,593,379 + -2.7
1,593,379 + -0.2
1,593,379 + +2.5
1,593,379 + -0.1
1,593,380 - -3.0
1,593,380 - +0.3
1,593,398 - +0.2
1,593,398 - +0.7
1,593,400 + +1.0
1,593,400 + +1.1
1,593,400 + -1.2
1,593,400 + +1.6
1,593,401 - -2.5
1,593,401 - +0.4
1,593,401 - -1.9
1,593,401 - -1.0
1,593,417 + -0.9
1,593,484 + PfGW456L13_1444 0.12 -0.9
1,593,484 + PfGW456L13_1444 0.12 +0.3
1,593,484 + PfGW456L13_1444 0.12 +0.8
1,593,484 + PfGW456L13_1444 0.12 -0.8
1,593,485 - PfGW456L13_1444 0.12 -3.2
1,593,485 - PfGW456L13_1444 0.12 +0.9
1,593,485 - PfGW456L13_1444 0.12 -3.0
1,593,485 - PfGW456L13_1444 0.12 -2.2
1,593,485 - PfGW456L13_1444 0.12 -0.0
1,593,583 + PfGW456L13_1444 0.17 -3.3
1,593,657 + PfGW456L13_1444 0.20 +2.5
1,593,658 - PfGW456L13_1444 0.20 +0.7
1,593,658 - PfGW456L13_1444 0.20 +1.3
1,593,658 - PfGW456L13_1444 0.20 +0.6
1,593,658 - PfGW456L13_1444 0.20 -0.3
1,593,658 - PfGW456L13_1444 0.20 +0.1
1,593,871 + PfGW456L13_1444 0.31 -0.1
1,593,871 + PfGW456L13_1444 0.31 -0.7
1,593,871 + PfGW456L13_1444 0.31 -1.7
1,593,871 + PfGW456L13_1444 0.31 -1.5
1,593,871 + PfGW456L13_1444 0.31 -0.3
1,593,871 + PfGW456L13_1444 0.31 +1.6
1,593,871 + PfGW456L13_1444 0.31 +0.5
1,593,871 + PfGW456L13_1444 0.31 +0.7
1,593,871 + PfGW456L13_1444 0.31 +1.4
1,593,871 + PfGW456L13_1444 0.31 -1.1
1,593,871 + PfGW456L13_1444 0.31 -3.3
1,593,871 + PfGW456L13_1444 0.31 -1.6
1,593,872 - PfGW456L13_1444 0.31 +0.5
1,593,872 - PfGW456L13_1444 0.31 -1.2
1,593,872 - PfGW456L13_1444 0.31 -3.1
1,593,872 - PfGW456L13_1444 0.31 +0.3
1,593,872 - PfGW456L13_1444 0.31 -2.2
1,593,872 - PfGW456L13_1444 0.31 +0.9
1,593,872 - PfGW456L13_1444 0.31 -1.8
1,593,872 - PfGW456L13_1444 0.31 +0.6
1,593,872 - PfGW456L13_1444 0.31 -1.1
1,593,872 - PfGW456L13_1444 0.31 -1.0
1,593,880 + PfGW456L13_1444 0.31 +0.4
1,593,880 + PfGW456L13_1444 0.31 -0.5
1,593,880 + PfGW456L13_1444 0.31 -2.4
1,593,880 + PfGW456L13_1444 0.31 -1.3
1,593,880 + PfGW456L13_1444 0.31 +0.3
1,593,881 - PfGW456L13_1444 0.31 +1.3
1,593,881 - PfGW456L13_1444 0.31 +1.9
1,593,881 - PfGW456L13_1444 0.31 +0.1
1,593,881 - PfGW456L13_1444 0.31 -0.0
1,593,923 + PfGW456L13_1444 0.33 +0.2
1,593,924 - PfGW456L13_1444 0.33 -1.8
1,593,924 - PfGW456L13_1444 0.33 +0.8
1,593,924 - PfGW456L13_1444 0.33 +1.7
1,593,999 + PfGW456L13_1444 0.37 +0.4
1,594,053 - PfGW456L13_1444 0.39 +1.5

Or see this region's nucleotide sequence