Strain Fitness in Pseudomonas sp. RS175 around PFR28_04489

Experiment: octanoate (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	octanoate (C) 10 mM
5,115,631	+		PFR28_04488	0.76	-1.1
5,115,632	-		PFR28_04488	0.76	-1.2
5,115,632	-		PFR28_04488	0.76	-2.1
5,115,637	+		PFR28_04488	0.76	-1.5
5,115,637	+		PFR28_04488	0.76	+0.2
5,115,686	+		PFR28_04488	0.78	-3.6
5,115,686	+		PFR28_04488	0.78	-2.9
5,115,686	+		PFR28_04488	0.78	-1.0
5,115,686	+		PFR28_04488	0.78	-2.6
5,115,687	-		PFR28_04488	0.78	-3.1
5,115,688	+		PFR28_04488	0.78	-3.4
5,115,688	+		PFR28_04488	0.78	-2.0
5,115,688	+		PFR28_04488	0.78	-3.5
5,115,688	+		PFR28_04488	0.78	-0.3
5,115,688	+		PFR28_04488	0.78	-0.3
5,115,688	+		PFR28_04488	0.78	-1.9
5,115,688	+		PFR28_04488	0.78	-1.7
5,115,688	+		PFR28_04488	0.78	-2.8
5,115,688	+		PFR28_04488	0.78	-1.9
5,115,688	+		PFR28_04488	0.78	-1.1
5,115,688	+		PFR28_04488	0.78	-3.3
5,115,689	-		PFR28_04488	0.78	-0.1
5,115,689	-		PFR28_04488	0.78	+0.7
5,115,689	-		PFR28_04488	0.78	+1.3
5,115,689	-		PFR28_04488	0.78	-1.5
5,115,689	-		PFR28_04488	0.78	-0.7
5,115,689	-		PFR28_04488	0.78	-0.9
5,115,689	-		PFR28_04488	0.78	-2.6
5,115,689	-		PFR28_04488	0.78	-0.8
5,115,689	-		PFR28_04488	0.78	-1.5
5,115,689	-		PFR28_04488	0.78	-1.8
5,115,692	+		PFR28_04488	0.79	-1.3
5,115,692	+		PFR28_04488	0.79	-3.2
5,115,692	+		PFR28_04488	0.79	+1.6
5,115,692	+		PFR28_04488	0.79	-2.1
5,115,692	+		PFR28_04488	0.79	-0.3
5,115,692	+		PFR28_04488	0.79	-1.5
5,115,692	+		PFR28_04488	0.79	-1.0
5,115,692	+		PFR28_04488	0.79	-1.5
5,115,692	+		PFR28_04488	0.79	-1.9
5,115,692	+		PFR28_04488	0.79	-3.3
5,115,692	+		PFR28_04488	0.79	-1.8
5,115,692	+		PFR28_04488	0.79	-0.5
5,115,692	+		PFR28_04488	0.79	-3.0
5,115,693	-		PFR28_04488	0.79	-0.7
5,115,693	-		PFR28_04488	0.79	-2.8
5,115,693	-		PFR28_04488	0.79	-1.5
5,115,693	-		PFR28_04488	0.79	-2.4
5,115,693	-		PFR28_04488	0.79	-2.1
5,115,994	+				-0.1
5,115,994	+				-2.7
5,115,994	+				-2.0
5,115,994	+				-1.5
5,115,994	+				-1.9
5,115,994	+				-3.4
5,115,995	-				-1.6
5,115,995	-				-0.3
5,115,995	-				-1.7
5,115,995	-				-2.0
5,115,995	-				-1.9
5,116,057	+				-3.4
5,116,057	+				-3.2
5,116,057	+				-0.4
5,116,057	+				-2.7
5,116,057	+				-1.3
5,116,058	-				-3.0
5,116,058	-				-0.7
5,116,058	-				-3.6
5,116,058	-				-1.6
5,116,058	-				+0.3
5,116,058	-				-1.4
5,116,118	+				-1.4
5,116,151	+				-1.3
5,116,192	+				-1.1
5,116,193	-				-0.3
5,116,203	+				+0.7
5,116,203	+				-1.2
5,116,204	-				-0.1
5,116,204	-				-0.1
5,116,398	+				-0.6
5,116,398	+				+0.1
5,116,398	+				+0.6
5,116,398	+				+0.4
5,116,399	-				+0.1
5,116,399	-				+0.1
5,116,399	-				-1.0
5,116,399	-				+0.1
5,116,458	-				+1.1
5,116,479	+				-1.2
5,116,479	+				-0.4
5,116,479	+				-1.3
5,116,479	+				-1.6
5,116,479	+				+0.3
5,116,479	+				-1.9
5,116,479	+				-1.1
5,116,479	+				-1.1
5,116,480	-				-1.5
5,116,480	-				-0.5
5,116,480	-				-1.1
5,116,480	-				-2.8
5,116,581	+		PFR28_04489	0.18	-1.9
5,116,581	+		PFR28_04489	0.18	-0.5
5,116,581	+		PFR28_04489	0.18	-1.8
5,116,582	-		PFR28_04489	0.19	-2.3
5,116,582	-		PFR28_04489	0.19	-0.7
5,116,582	-		PFR28_04489	0.19	-1.1
5,116,582	-		PFR28_04489	0.19	-2.3
5,116,582	-		PFR28_04489	0.19	-1.7
5,116,582	-		PFR28_04489	0.19	-2.1
5,116,582	-		PFR28_04489	0.19	-1.6
5,116,587	+		PFR28_04489	0.19	-1.2
5,116,587	+		PFR28_04489	0.19	+0.3
5,116,587	+		PFR28_04489	0.19	-1.4
5,116,588	-		PFR28_04489	0.19	-0.7
5,116,588	-		PFR28_04489	0.19	+0.7
5,116,588	-		PFR28_04489	0.19	-2.9
5,116,588	-		PFR28_04489	0.19	-1.1
5,116,608	+		PFR28_04489	0.21	-1.3
5,116,608	+		PFR28_04489	0.21	-3.8
5,116,609	-		PFR28_04489	0.21	-1.6
5,116,701	+		PFR28_04489	0.30	+0.3
5,116,794	+		PFR28_04489	0.40	+0.0
5,116,794	+		PFR28_04489	0.40	-0.0
5,116,827	+		PFR28_04489	0.43	-0.7
5,116,828	-		PFR28_04489	0.43	-0.9
5,116,833	+		PFR28_04489	0.44	-0.7
5,116,833	+		PFR28_04489	0.44	-0.9
5,116,833	+		PFR28_04489	0.44	-2.4
5,116,833	+		PFR28_04489	0.44	-1.0
5,116,833	+		PFR28_04489	0.44	-1.0
5,116,834	-		PFR28_04489	0.44	-1.3
5,117,059	-		PFR28_04489	0.66	-0.0
5,117,065	-		PFR28_04489	0.67	+2.1
5,117,065	-		PFR28_04489	0.67	-1.9
5,117,065	-		PFR28_04489	0.67	-1.9
5,117,065	-		PFR28_04489	0.67	-1.4
5,117,189	+		PFR28_04489	0.79	-0.1
5,117,189	+		PFR28_04489	0.79	-1.6
5,117,190	-		PFR28_04489	0.79	-1.5
5,117,190	-		PFR28_04489	0.79	+0.1
5,117,211	+		PFR28_04489	0.81	-1.2
5,117,211	+		PFR28_04489	0.81	-0.5
5,117,211	+		PFR28_04489	0.81	-0.9
5,117,211	+		PFR28_04489	0.81	-1.0
5,117,211	+		PFR28_04489	0.81	+0.3
5,117,211	+		PFR28_04489	0.81	-1.2
5,117,211	+		PFR28_04489	0.81	-1.3
5,117,211	+		PFR28_04489	0.81	-0.7
5,117,212	-		PFR28_04489	0.82	-1.1
5,117,212	-		PFR28_04489	0.82	-2.6
5,117,212	-		PFR28_04489	0.82	-1.4
5,117,212	-		PFR28_04489	0.82	-0.6
5,117,212	-		PFR28_04489	0.82	-1.7
5,117,212	-		PFR28_04489	0.82	-2.4
5,117,298	+				-0.7
5,117,298	+				-1.7
5,117,298	+				+0.1
5,117,298	+				-0.3
5,117,299	-				-2.4
5,117,401	-				-0.6
5,117,401	-				-0.5
5,117,401	-				-0.3
5,117,406	+				-0.4
5,117,406	+				+0.2
5,117,406	+				+0.1
5,117,407	-				-0.0
5,117,407	-				-0.2
5,117,413	+				-0.1
5,117,413	+				+0.3
5,117,413	+				-0.6
5,117,413	+				+0.3
5,117,414	-				-0.0
5,117,414	-				+0.2
5,117,414	-				+1.7
5,117,414	-				-0.7
5,117,414	-				+1.0
5,117,423	+				+0.1
5,117,423	+				+0.2
5,117,423	+				+0.2
5,117,423	+				+0.1
5,117,424	-				-0.3
5,117,424	-				-0.4
5,117,424	-				+0.2
5,117,424	-				+0.0
5,117,436	+				-0.9
5,117,436	+				+1.1
5,117,436	+				-0.9
5,117,436	+				-0.3
5,117,436	+				-0.3
5,117,436	+				-1.2
5,117,437	-				-0.2
5,117,437	-				-0.7
5,117,437	-				+0.6
5,117,437	-				-0.3
5,117,437	-				+0.4
5,117,437	-				+0.3
5,117,437	-				+0.3
5,117,442	+				+0.1
5,117,442	+				-0.2
5,117,460	+				-0.0
5,117,460	+				+0.3
5,117,461	-				+0.0
5,117,461	-				-1.0
5,117,461	-				-0.0
5,117,461	-				+0.5
5,117,461	-				-0.8
5,117,471	+				-1.9
5,117,505	+				-0.3
5,117,506	-				+0.1
5,117,506	-				+1.1
5,117,530	+				+1.8
5,117,530	+				-0.0
5,117,530	+				+0.9
5,117,530	+				+0.0
5,117,530	+				-0.3
5,117,531	-				+0.8
5,117,531	-				+0.3
5,117,531	-				+0.4
5,117,531	-				+1.3
5,117,531	-				-0.6
5,117,575	+				-0.7
5,117,575	+				+1.0
5,117,576	-				-0.1
5,117,576	-				-0.7
5,117,576	-				+0.3
5,117,617	+				+0.2
5,117,617	+				+0.9
5,117,617	+				+0.2
5,117,617	+				-0.8
5,117,617	+				-0.1
5,117,617	+				+1.4
5,117,617	+				+0.5
5,117,617	+				+0.9
5,117,617	+				+0.2
5,117,618	-				-0.2
5,117,618	-				+0.5
5,117,618	-				-0.6
5,117,618	-				-0.1
5,117,618	-				+0.0
5,117,620	+				-0.3
5,117,621	-				-0.6
5,117,621	-				-0.1
5,117,621	-				-0.8
5,117,621	-				+0.0
5,117,704	+		PFR28_04490	0.12	+0.1
5,117,704	+		PFR28_04490	0.12	-1.3
5,117,704	+		PFR28_04490	0.12	-0.2
5,117,704	+		PFR28_04490	0.12	-1.1
5,117,704	+		PFR28_04490	0.12	-0.7
5,117,705	-		PFR28_04490	0.12	-0.9
5,117,705	-		PFR28_04490	0.12	+0.2
5,117,705	-		PFR28_04490	0.12	+1.3
5,117,705	-		PFR28_04490	0.12	-0.4
5,117,705	-		PFR28_04490	0.12	+0.2
5,117,705	-		PFR28_04490	0.12	-0.8
5,117,705	-		PFR28_04490	0.12	+0.0
5,117,761	+		PFR28_04490	0.16	-0.4
5,117,761	+		PFR28_04490	0.16	-0.9
5,117,761	+		PFR28_04490	0.16	+0.1
5,117,761	+		PFR28_04490	0.16	+0.5
5,117,761	+		PFR28_04490	0.16	-0.2
5,117,761	+		PFR28_04490	0.16	-0.2
5,117,762	-		PFR28_04490	0.16	-0.4
5,117,762	-		PFR28_04490	0.16	-0.4
5,117,806	+		PFR28_04490	0.19	+0.5
5,117,806	+		PFR28_04490	0.19	-0.2
5,117,806	+		PFR28_04490	0.19	-0.0
5,117,806	+		PFR28_04490	0.19	+0.2
5,117,806	+		PFR28_04490	0.19	+0.7
5,117,807	-		PFR28_04490	0.20	+1.3
5,117,807	-		PFR28_04490	0.20	-0.3
5,117,807	-		PFR28_04490	0.20	+0.2
5,117,807	-		PFR28_04490	0.20	+0.1
5,117,807	-		PFR28_04490	0.20	+0.2
5,117,807	-		PFR28_04490	0.20	+1.3
5,117,807	-		PFR28_04490	0.20	-0.0
5,117,807	-		PFR28_04490	0.20	+0.0
5,117,848	+		PFR28_04490	0.23	-0.9
5,117,848	+		PFR28_04490	0.23	+0.0
5,117,848	+		PFR28_04490	0.23	+0.2
5,117,849	-		PFR28_04490	0.23	-1.0
5,117,849	-		PFR28_04490	0.23	+0.8
5,117,861	+		PFR28_04490	0.24	+0.0
5,117,862	-		PFR28_04490	0.24	+0.2
5,117,862	-		PFR28_04490	0.24	-0.3
5,118,007	+		PFR28_04490	0.35	-0.5
5,118,007	+		PFR28_04490	0.35	+0.1
5,118,007	+		PFR28_04490	0.35	+0.9
5,118,008	-		PFR28_04490	0.35	+0.4
5,118,008	-		PFR28_04490	0.35	-0.1
5,118,205	+		PFR28_04490	0.50	-1.2
5,118,205	+		PFR28_04490	0.50	+0.9
5,118,205	+		PFR28_04490	0.50	+0.5
5,118,206	-		PFR28_04490	0.50	-1.3
5,118,206	-		PFR28_04490	0.50	+1.1
5,118,281	+		PFR28_04490	0.56	-0.1
5,118,281	+		PFR28_04490	0.56	+0.0
5,118,281	+		PFR28_04490	0.56	-0.2
5,118,282	-		PFR28_04490	0.56	+0.1
5,118,282	-		PFR28_04490	0.56	-0.9
5,118,282	-		PFR28_04490	0.56	-0.1
5,118,282	-		PFR28_04490	0.56	+0.1
5,118,282	-		PFR28_04490	0.56	+0.2
5,118,282	-		PFR28_04490	0.56	-0.6
5,118,283	+		PFR28_04490	0.56	+0.6
5,118,284	-		PFR28_04490	0.56	+0.5