Strain Fitness in Pseudomonas simiae WCS417 around PS417_03435

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_03430 and PS417_03435 overlap by 4 nucleotidesPS417_03435 and PS417_03445 are separated by 566 nucleotidesPS417_03445 and PS417_03450 are separated by 191 nucleotides PS417_03430: PS417_03430 - methyltransferase type 11, at 789,520 to 790,326 _03430 PS417_03435: PS417_03435 - cytochrome P450, at 790,323 to 792,323 _03435 PS417_03445: PS417_03445 - tRNA-Met, at 792,890 to 792,966 _03445 PS417_03450: PS417_03450 - RNA polymerase sigma factor, at 793,158 to 793,709 _03450 Position (kb) 790 791 792 793Strain fitness (log2 ratio) -2 -1 0 1 2at 789.631 kb on + strand, within PS417_03430at 789.632 kb on - strand, within PS417_03430at 789.669 kb on + strand, within PS417_03430at 789.670 kb on - strand, within PS417_03430at 790.253 kb on + strandat 790.253 kb on - strandat 790.253 kb on - strandat 790.280 kb on + strandat 790.281 kb on - strandat 790.281 kb on - strandat 790.281 kb on - strandat 790.419 kb on + strandat 790.532 kb on + strand, within PS417_03435at 790.532 kb on + strand, within PS417_03435at 790.533 kb on - strand, within PS417_03435at 791.018 kb on - strand, within PS417_03435at 791.055 kb on + strand, within PS417_03435at 791.245 kb on - strand, within PS417_03435at 791.323 kb on + strandat 791.444 kb on - strand, within PS417_03435at 791.444 kb on - strand, within PS417_03435at 791.444 kb on - strand, within PS417_03435at 791.959 kb on + strand, within PS417_03435at 792.207 kb on + strandat 792.466 kb on - strandat 792.466 kb on - strandat 792.466 kb on - strandat 792.633 kb on + strandat 792.634 kb on - strandat 792.634 kb on - strandat 793.235 kb on + strand, within PS417_03450at 793.294 kb on + strand, within PS417_03450

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
789,631 + PS417_03430 0.14 -0.4
789,632 - PS417_03430 0.14 +0.5
789,669 + PS417_03430 0.18 -0.5
789,670 - PS417_03430 0.19 -0.3
790,253 + -0.1
790,253 - -0.2
790,253 - +1.3
790,280 + +1.8
790,281 - -1.1
790,281 - -0.7
790,281 - +0.0
790,419 + -0.3
790,532 + PS417_03435 0.10 -0.6
790,532 + PS417_03435 0.10 -1.1
790,533 - PS417_03435 0.10 -0.8
791,018 - PS417_03435 0.35 -0.6
791,055 + PS417_03435 0.37 -0.4
791,245 - PS417_03435 0.46 -0.3
791,323 + +0.7
791,444 - PS417_03435 0.56 -0.2
791,444 - PS417_03435 0.56 -0.0
791,444 - PS417_03435 0.56 -1.6
791,959 + PS417_03435 0.82 -2.3
792,207 + -1.3
792,466 - +1.3
792,466 - +0.7
792,466 - -1.3
792,633 + -0.7
792,634 - -1.3
792,634 - +0.8
793,235 + PS417_03450 0.14 -0.3
793,294 + PS417_03450 0.25 -0.0

Or see this region's nucleotide sequence