Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS24650

Experiment: 30_an_mag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_mag_2
3,953,577	-		AMB_RS18220	0.73	-0.6
3,953,754	+				-2.3
3,953,755	-				-0.3
3,954,045	+		AMB_RS18225	0.26	+0.5
3,954,046	-		AMB_RS18225	0.26	-0.1
3,954,139	+		AMB_RS18225	0.47	-1.7
3,954,140	-		AMB_RS18225	0.47	+0.3
3,954,251	+		AMB_RS18225	0.72	-0.1
3,954,252	-		AMB_RS18225	0.72	-0.1
3,954,252	-		AMB_RS18225	0.72	+0.6
3,954,292	+		AMB_RS18225	0.81	-0.1
3,954,293	-		AMB_RS18225	0.81	-0.9
3,954,293	-		AMB_RS18225	0.81	-1.5
3,954,293	-		AMB_RS18225	0.81	-2.6
3,954,426	+				-0.6
3,954,426	+				-2.1
3,954,426	+				+0.7
3,954,426	+				-0.5
3,954,426	+				+0.2
3,954,426	+				-0.9
3,954,427	-				-0.2
3,954,427	-				-0.2
3,954,427	-				-0.1
3,954,427	-				-1.5
3,954,431	+				-2.1
3,954,431	+				-0.2
3,954,431	+				-0.5
3,954,431	+				-1.1
3,954,431	+				+0.4
3,954,432	-				+0.4
3,954,432	-				+0.4
3,954,432	-				+0.1
3,954,432	-				+0.1
3,954,437	+				+0.5
3,954,437	+				-0.5
3,954,437	+				-2.1
3,954,437	+				+0.1
3,954,437	+				-1.3
3,954,437	+				-0.1
3,954,437	+				+0.1
3,954,437	+				-1.7
3,954,438	-				-1.5
3,954,438	-				-0.1
3,954,577	+				-0.9
3,954,679	+		AMB_RS24650	0.10	-1.3
3,954,679	+		AMB_RS24650	0.10	-0.9
3,954,679	+		AMB_RS24650	0.10	+0.2
3,954,679	+		AMB_RS24650	0.10	+0.2
3,954,679	+		AMB_RS24650	0.10	+0.3
3,954,679	+		AMB_RS24650	0.10	-0.6
3,954,680	-		AMB_RS24650	0.10	+0.3
3,954,680	-		AMB_RS24650	0.10	+1.4
3,954,680	-		AMB_RS24650	0.10	-0.3
3,954,680	-		AMB_RS24650	0.10	+1.0
3,954,680	-		AMB_RS24650	0.10	-0.9
3,954,763	+		AMB_RS24650	0.15	-0.5
3,954,764	-		AMB_RS24650	0.15	-2.3
3,954,764	-		AMB_RS24650	0.15	+0.5
3,954,804	+		AMB_RS24650	0.17	-1.9
3,954,804	+		AMB_RS24650	0.17	-0.5
3,954,804	+		AMB_RS24650	0.17	-0.3
3,954,804	+		AMB_RS24650	0.17	-0.9
3,954,804	+		AMB_RS24650	0.17	-1.3
3,954,805	-		AMB_RS24650	0.17	-0.5
3,954,805	-		AMB_RS24650	0.17	+0.5
3,954,858	+		AMB_RS24650	0.20	-2.3
3,954,859	-		AMB_RS24650	0.20	-0.9
3,954,859	-		AMB_RS24650	0.20	+0.3
3,954,859	-		AMB_RS24650	0.20	+1.5
3,954,866	-		AMB_RS24650	0.21	-1.5
3,954,866	-		AMB_RS24650	0.21	-0.2
3,954,866	-		AMB_RS24650	0.21	-0.4
3,955,105	+		AMB_RS24650	0.34	+1.5
3,955,105	+		AMB_RS24650	0.34	-0.2
3,955,105	+		AMB_RS24650	0.34	+1.5
3,955,105	+		AMB_RS24650	0.34	+0.9
3,955,105	+		AMB_RS24650	0.34	-1.2
3,955,106	-		AMB_RS24650	0.34	-0.5
3,955,106	-		AMB_RS24650	0.34	+0.5
3,955,106	-		AMB_RS24650	0.34	+0.5
3,955,106	-		AMB_RS24650	0.34	-1.1
3,955,106	-		AMB_RS24650	0.34	+1.0
3,955,178	+		AMB_RS24650	0.38	-0.5
3,955,346	+		AMB_RS24650	0.47	+0.5
3,955,346	+		AMB_RS24650	0.47	-1.1
3,955,347	-		AMB_RS24650	0.47	+0.1
3,955,347	-		AMB_RS24650	0.47	+0.3
3,955,347	-		AMB_RS24650	0.47	-1.1
3,955,347	-		AMB_RS24650	0.47	-0.3
3,955,347	-		AMB_RS24650	0.47	-0.3
3,955,507	+		AMB_RS24650	0.56	-0.5
3,955,507	+		AMB_RS24650	0.56	+0.2
3,955,507	+		AMB_RS24650	0.56	-3.3
3,955,507	+		AMB_RS24650	0.56	-0.5
3,955,507	+		AMB_RS24650	0.56	+0.6
3,955,508	-		AMB_RS24650	0.56	-0.1
3,955,508	-		AMB_RS24650	0.56	+0.3
3,955,618	+		AMB_RS24650	0.62	+0.1
3,955,618	+		AMB_RS24650	0.62	-0.5
3,955,618	+		AMB_RS24650	0.62	-0.0
3,955,618	+		AMB_RS24650	0.62	-1.1
3,955,618	+		AMB_RS24650	0.62	-0.9
3,955,618	+		AMB_RS24650	0.62	+0.6
3,955,618	+		AMB_RS24650	0.62	+0.5
3,955,618	+		AMB_RS24650	0.62	-2.2
3,955,619	-		AMB_RS24650	0.62	+0.3
3,955,619	-		AMB_RS24650	0.62	-0.5
3,955,619	-		AMB_RS24650	0.62	-0.9
3,955,619	-		AMB_RS24650	0.62	-1.5
3,955,619	-		AMB_RS24650	0.62	-0.9
3,955,619	-		AMB_RS24650	0.62	+1.5
3,955,620	+		AMB_RS24650	0.63	-1.1
3,955,620	+		AMB_RS24650	0.63	+0.4
3,955,620	+		AMB_RS24650	0.63	+1.5
3,955,620	+		AMB_RS24650	0.63	+0.4
3,955,620	+		AMB_RS24650	0.63	+0.3
3,955,620	+		AMB_RS24650	0.63	-2.6
3,955,621	-		AMB_RS24650	0.63	-3.0
3,955,621	-		AMB_RS24650	0.63	-0.3
3,955,621	-		AMB_RS24650	0.63	+0.3
3,955,621	-		AMB_RS24650	0.63	-0.9
3,955,621	-		AMB_RS24650	0.63	+0.5
3,955,621	-		AMB_RS24650	0.63	+0.2
3,955,621	-		AMB_RS24650	0.63	+1.0
3,955,621	-		AMB_RS24650	0.63	-0.9
3,955,621	-		AMB_RS24650	0.63	-0.4
3,955,894	+		AMB_RS24650	0.78	-1.3
3,955,894	+		AMB_RS24650	0.78	+0.5
3,955,894	+		AMB_RS24650	0.78	+0.2
3,955,895	-		AMB_RS24650	0.78	+1.0
3,955,896	+		AMB_RS24650	0.78	+0.3
3,955,897	-		AMB_RS24650	0.78	-1.7
3,955,906	+		AMB_RS24650	0.78	+0.5
3,955,906	+		AMB_RS24650	0.78	-0.5
3,955,907	-		AMB_RS24650	0.79	-0.9
3,956,318	+				-1.3
3,956,319	-				-1.5
3,956,319	-				-0.9
3,956,319	-				+0.0
3,956,375	+				-0.4
3,956,375	+				-1.3
3,956,375	+				-2.1
3,956,396	+		AMB_RS18240	0.12	-2.0
3,956,451	-		AMB_RS18240	0.21	-0.1
3,956,451	-		AMB_RS18240	0.21	+0.4
3,956,451	-		AMB_RS18240	0.21	-0.5
3,956,493	-		AMB_RS18240	0.28	+0.8
3,956,582	+		AMB_RS18240	0.43	-0.5
3,956,582	+		AMB_RS18240	0.43	-0.3
3,956,582	+		AMB_RS18240	0.43	-0.9
3,956,583	-		AMB_RS18240	0.44	-2.4
3,956,583	-		AMB_RS18240	0.44	-0.9
3,956,583	-		AMB_RS18240	0.44	-0.1
3,956,583	-		AMB_RS18240	0.44	-1.3
3,956,583	-		AMB_RS18240	0.44	-0.5
3,956,585	+		AMB_RS18240	0.44	+0.2
3,956,585	+		AMB_RS18240	0.44	+1.5
3,956,585	+		AMB_RS18240	0.44	-1.5
3,956,585	+		AMB_RS18240	0.44	-1.5
3,956,585	+		AMB_RS18240	0.44	+0.5
3,956,586	-		AMB_RS18240	0.44	-0.9
3,956,586	-		AMB_RS18240	0.44	-2.2
3,956,663	+		AMB_RS18240	0.57	+1.5
3,956,663	+		AMB_RS18240	0.57	-1.3
3,956,663	+		AMB_RS18240	0.57	-1.5
3,956,708	+		AMB_RS18240	0.65	+0.2
3,956,708	+		AMB_RS18240	0.65	-0.2
3,956,831	+		AMB_RS18240	0.85	-1.3
3,956,831	+		AMB_RS18240	0.85	+0.2
3,956,832	-		AMB_RS18240	0.86	-1.1
3,956,832	-		AMB_RS18240	0.86	+0.5
3,956,832	-		AMB_RS18240	0.86	-1.0
3,956,832	-		AMB_RS18240	0.86	-0.2
3,956,832	-		AMB_RS18240	0.86	-0.1
3,956,879	+				+1.5
3,956,880	-				+0.4
3,956,880	-				-0.9
3,956,963	+				-0.5
3,956,989	+				+1.0
3,957,017	+				-0.2
3,957,017	+				+1.5
3,957,017	+				-0.1
3,957,017	+				-0.0
3,957,018	-				-1.1
3,957,018	-				-1.4
3,957,018	-				+0.1
3,957,018	-				-0.5
3,957,032	+				-3.1
3,957,032	+				+0.5
3,957,033	-				-0.4
3,957,163	+		AMB_RS18245	0.31	+1.5
3,957,163	+		AMB_RS18245	0.31	+0.6
3,957,163	+		AMB_RS18245	0.31	+0.3
3,957,163	+		AMB_RS18245	0.31	-0.8
3,957,163	+		AMB_RS18245	0.31	-0.1
3,957,163	+		AMB_RS18245	0.31	+0.5
3,957,163	+		AMB_RS18245	0.31	-2.9
3,957,163	+		AMB_RS18245	0.31	-0.8
3,957,163	+		AMB_RS18245	0.31	+0.2
3,957,163	+		AMB_RS18245	0.31	+0.2
3,957,164	-		AMB_RS18245	0.31	+0.7
3,957,164	-		AMB_RS18245	0.31	+0.4
3,957,164	-		AMB_RS18245	0.31	+0.4
3,957,164	-		AMB_RS18245	0.31	-0.5
3,957,164	-		AMB_RS18245	0.31	+0.6
3,957,164	-		AMB_RS18245	0.31	-1.5