Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23200

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05445 and AMB_RS23200 are separated by 16 nucleotidesAMB_RS23200 and AMB_RS05455 are separated by 180 nucleotides AMB_RS05445: AMB_RS05445 - MBOAT family protein, at 1,128,101 to 1,129,525 _RS05445 AMB_RS23200: AMB_RS23200 - NUDIX hydrolase, at 1,129,542 to 1,130,246 _RS23200 AMB_RS05455: AMB_RS05455 - glycosyltransferase family 2 protein, at 1,130,427 to 1,131,452 _RS05455 Position (kb) 1129 1130 1131Strain fitness (log2 ratio) -3 -2 -1 0 1at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.642 kb on + strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.711 kb on + strand, within AMB_RS05445at 1128.711 kb on + strand, within AMB_RS05445at 1128.799 kb on - strand, within AMB_RS05445at 1128.837 kb on + strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.920 kb on + strand, within AMB_RS05445at 1128.920 kb on + strand, within AMB_RS05445at 1128.921 kb on - strand, within AMB_RS05445at 1129.051 kb on + strand, within AMB_RS05445at 1129.051 kb on + strand, within AMB_RS05445at 1129.052 kb on - strand, within AMB_RS05445at 1129.052 kb on - strand, within AMB_RS05445at 1129.052 kb on - strand, within AMB_RS05445at 1129.052 kb on - strand, within AMB_RS05445at 1129.053 kb on + strand, within AMB_RS05445at 1129.053 kb on + strand, within AMB_RS05445at 1129.054 kb on - strand, within AMB_RS05445at 1129.054 kb on - strand, within AMB_RS05445at 1129.054 kb on - strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.101 kb on + strand, within AMB_RS05445at 1129.102 kb on - strand, within AMB_RS05445at 1129.239 kb on + strand, within AMB_RS05445at 1129.239 kb on + strand, within AMB_RS05445at 1129.249 kb on - strand, within AMB_RS05445at 1129.249 kb on - strand, within AMB_RS05445at 1129.442 kb on - strandat 1129.739 kb on - strand, within AMB_RS23200at 1129.799 kb on + strand, within AMB_RS23200at 1130.089 kb on + strand, within AMB_RS23200at 1130.225 kb on + strandat 1130.226 kb on - strandat 1130.246 kb on + strandat 1130.246 kb on + strandat 1130.260 kb on + strandat 1130.260 kb on + strandat 1130.260 kb on + strandat 1130.261 kb on - strandat 1130.262 kb on + strandat 1130.262 kb on + strandat 1130.262 kb on + strandat 1130.262 kb on + strandat 1130.263 kb on - strandat 1130.285 kb on + strandat 1130.286 kb on - strandat 1130.286 kb on - strandat 1130.286 kb on - strandat 1130.316 kb on + strandat 1130.316 kb on + strandat 1130.413 kb on + strandat 1130.459 kb on + strandat 1130.459 kb on + strandat 1130.459 kb on + strandat 1130.460 kb on - strandat 1130.496 kb on + strandat 1130.496 kb on + strandat 1130.497 kb on - strandat 1130.547 kb on + strand, within AMB_RS05455at 1130.547 kb on + strand, within AMB_RS05455at 1130.548 kb on - strand, within AMB_RS05455at 1130.548 kb on - strand, within AMB_RS05455at 1130.634 kb on - strand, within AMB_RS05455at 1130.879 kb on + strand, within AMB_RS05455at 1130.947 kb on + strand, within AMB_RS05455at 1130.983 kb on - strand, within AMB_RS05455at 1130.983 kb on - strand, within AMB_RS05455at 1131.081 kb on + strand, within AMB_RS05455at 1131.081 kb on + strand, within AMB_RS05455at 1131.081 kb on + strand, within AMB_RS05455at 1131.082 kb on - strand, within AMB_RS05455at 1131.082 kb on - strand, within AMB_RS05455at 1131.139 kb on + strand, within AMB_RS05455at 1131.139 kb on + strand, within AMB_RS05455at 1131.140 kb on - strand, within AMB_RS05455at 1131.140 kb on - strand, within AMB_RS05455at 1131.140 kb on - strand, within AMB_RS05455at 1131.143 kb on + strand, within AMB_RS05455at 1131.177 kb on + strand, within AMB_RS05455at 1131.197 kb on - strand, within AMB_RS05455at 1131.198 kb on + strand, within AMB_RS05455at 1131.199 kb on - strand, within AMB_RS05455at 1131.204 kb on + strand, within AMB_RS05455at 1131.205 kb on - strand, within AMB_RS05455at 1131.231 kb on - strand, within AMB_RS05455

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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1,128,636 + AMB_RS05445 0.38 +0.3
1,128,636 + AMB_RS05445 0.38 +0.3
1,128,636 + AMB_RS05445 0.38 -0.6
1,128,636 + AMB_RS05445 0.38 -1.8
1,128,636 + AMB_RS05445 0.38 +0.4
1,128,636 + AMB_RS05445 0.38 -0.9
1,128,636 + AMB_RS05445 0.38 -1.9
1,128,636 + AMB_RS05445 0.38 -2.2
1,128,636 + AMB_RS05445 0.38 -0.2
1,128,636 + AMB_RS05445 0.38 +0.5
1,128,636 + AMB_RS05445 0.38 -0.3
1,128,636 + AMB_RS05445 0.38 -0.2
1,128,636 + AMB_RS05445 0.38 +0.7
1,128,636 + AMB_RS05445 0.38 -0.7
1,128,637 - AMB_RS05445 0.38 -0.2
1,128,637 - AMB_RS05445 0.38 -0.1
1,128,637 - AMB_RS05445 0.38 +0.4
1,128,637 - AMB_RS05445 0.38 -0.0
1,128,637 - AMB_RS05445 0.38 -2.6
1,128,637 - AMB_RS05445 0.38 +1.4
1,128,637 - AMB_RS05445 0.38 -2.5
1,128,637 - AMB_RS05445 0.38 -0.4
1,128,637 - AMB_RS05445 0.38 -1.2
1,128,637 - AMB_RS05445 0.38 +0.9
1,128,642 + AMB_RS05445 0.38 +0.7
1,128,643 - AMB_RS05445 0.38 +0.1
1,128,643 - AMB_RS05445 0.38 -1.8
1,128,643 - AMB_RS05445 0.38 +0.3
1,128,643 - AMB_RS05445 0.38 +1.4
1,128,711 + AMB_RS05445 0.43 -1.2
1,128,711 + AMB_RS05445 0.43 +0.8
1,128,799 - AMB_RS05445 0.49 -0.2
1,128,837 + AMB_RS05445 0.52 -0.4
1,128,838 - AMB_RS05445 0.52 -0.6
1,128,838 - AMB_RS05445 0.52 -2.0
1,128,838 - AMB_RS05445 0.52 -2.5
1,128,838 - AMB_RS05445 0.52 -0.6
1,128,920 + AMB_RS05445 0.57 +1.4
1,128,920 + AMB_RS05445 0.57 -0.6
1,128,921 - AMB_RS05445 0.58 +0.4
1,129,051 + AMB_RS05445 0.67 -3.1
1,129,051 + AMB_RS05445 0.67 -0.4
1,129,052 - AMB_RS05445 0.67 -1.4
1,129,052 - AMB_RS05445 0.67 +0.4
1,129,052 - AMB_RS05445 0.67 -0.7
1,129,052 - AMB_RS05445 0.67 +0.4
1,129,053 + AMB_RS05445 0.67 -0.5
1,129,053 + AMB_RS05445 0.67 +0.0
1,129,054 - AMB_RS05445 0.67 -1.6
1,129,054 - AMB_RS05445 0.67 +1.4
1,129,054 - AMB_RS05445 0.67 -0.6
1,129,101 + AMB_RS05445 0.70 -2.3
1,129,101 + AMB_RS05445 0.70 -0.9
1,129,101 + AMB_RS05445 0.70 -0.6
1,129,101 + AMB_RS05445 0.70 -0.9
1,129,101 + AMB_RS05445 0.70 +1.4
1,129,101 + AMB_RS05445 0.70 +0.4
1,129,101 + AMB_RS05445 0.70 -0.0
1,129,102 - AMB_RS05445 0.70 -0.6
1,129,239 + AMB_RS05445 0.80 +1.4
1,129,239 + AMB_RS05445 0.80 -2.8
1,129,249 - AMB_RS05445 0.81 +0.4
1,129,249 - AMB_RS05445 0.81 +0.7
1,129,442 - -0.6
1,129,739 - AMB_RS23200 0.28 +0.4
1,129,799 + AMB_RS23200 0.36 +0.1
1,130,089 + AMB_RS23200 0.78 -0.1
1,130,225 + -0.6
1,130,226 - +0.4
1,130,246 + -0.1
1,130,246 + -0.4
1,130,260 + +0.4
1,130,260 + -1.0
1,130,260 + +0.0
1,130,261 - -0.3
1,130,262 + -0.1
1,130,262 + -0.2
1,130,262 + -0.5
1,130,262 + -2.3
1,130,263 - -1.8
1,130,285 + -3.1
1,130,286 - +0.2
1,130,286 - -0.2
1,130,286 - -0.6
1,130,316 + -2.8
1,130,316 + +0.4
1,130,413 + +0.3
1,130,459 + -1.2
1,130,459 + -0.0
1,130,459 + -1.2
1,130,460 - -0.9
1,130,496 + +0.2
1,130,496 + -0.4
1,130,497 - -0.8
1,130,547 + AMB_RS05455 0.12 -0.1
1,130,547 + AMB_RS05455 0.12 +0.3
1,130,548 - AMB_RS05455 0.12 -1.1
1,130,548 - AMB_RS05455 0.12 -2.7
1,130,634 - AMB_RS05455 0.20 -0.9
1,130,879 + AMB_RS05455 0.44 -1.9
1,130,947 + AMB_RS05455 0.51 -0.6
1,130,983 - AMB_RS05455 0.54 -0.6
1,130,983 - AMB_RS05455 0.54 +0.8
1,131,081 + AMB_RS05455 0.64 -1.2
1,131,081 + AMB_RS05455 0.64 -0.1
1,131,081 + AMB_RS05455 0.64 -0.3
1,131,082 - AMB_RS05455 0.64 +0.0
1,131,082 - AMB_RS05455 0.64 +0.3
1,131,139 + AMB_RS05455 0.69 -1.6
1,131,139 + AMB_RS05455 0.69 -0.2
1,131,140 - AMB_RS05455 0.69 +1.0
1,131,140 - AMB_RS05455 0.69 -2.7
1,131,140 - AMB_RS05455 0.69 -0.2
1,131,143 + AMB_RS05455 0.70 +0.7
1,131,177 + AMB_RS05455 0.73 -2.2
1,131,197 - AMB_RS05455 0.75 -0.9
1,131,198 + AMB_RS05455 0.75 +0.9
1,131,199 - AMB_RS05455 0.75 -0.7
1,131,204 + AMB_RS05455 0.76 +0.0
1,131,205 - AMB_RS05455 0.76 +0.2
1,131,231 - AMB_RS05455 0.78 -1.9

Or see this region's nucleotide sequence