Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22430

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22425 and AMB_RS22430 are separated by 77 nucleotidesAMB_RS22430 and AMB_RS22435 are separated by 312 nucleotidesAMB_RS22435 and AMB_RS22440 are separated by 49 nucleotides AMB_RS22425: AMB_RS22425 - hypothetical protein, at 4,840,675 to 4,841,697 _RS22425 AMB_RS22430: AMB_RS22430 - integrase, at 4,841,775 to 4,843,274 _RS22430 AMB_RS22435: AMB_RS22435 - tRNA-Gln, at 4,843,587 to 4,843,661 _RS22435 AMB_RS22440: AMB_RS22440 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 4,843,711 to 4,844,568 _RS22440 Position (kb) 4841 4842 4843 4844Strain fitness (log2 ratio) -2 -1 0 1at 4841.744 kb on - strandat 4841.744 kb on - strandat 4841.744 kb on - strandat 4841.744 kb on - strandat 4841.744 kb on - strandat 4841.772 kb on - strandat 4841.776 kb on + strandat 4841.812 kb on + strandat 4841.829 kb on - strandat 4841.829 kb on - strandat 4841.974 kb on + strand, within AMB_RS22430at 4841.974 kb on + strand, within AMB_RS22430at 4841.975 kb on - strand, within AMB_RS22430at 4842.008 kb on - strand, within AMB_RS22430at 4842.008 kb on - strand, within AMB_RS22430at 4842.008 kb on - strand, within AMB_RS22430at 4842.008 kb on - strand, within AMB_RS22430at 4842.034 kb on + strand, within AMB_RS22430at 4842.053 kb on + strand, within AMB_RS22430at 4842.054 kb on - strand, within AMB_RS22430at 4842.078 kb on + strand, within AMB_RS22430at 4842.078 kb on + strand, within AMB_RS22430at 4842.078 kb on + strand, within AMB_RS22430at 4842.079 kb on - strand, within AMB_RS22430at 4842.079 kb on - strand, within AMB_RS22430at 4842.079 kb on - strand, within AMB_RS22430at 4842.103 kb on - strand, within AMB_RS22430at 4842.115 kb on + strand, within AMB_RS22430at 4842.158 kb on + strand, within AMB_RS22430at 4842.280 kb on - strand, within AMB_RS22430at 4842.280 kb on - strand, within AMB_RS22430at 4842.280 kb on - strand, within AMB_RS22430at 4842.338 kb on - strand, within AMB_RS22430at 4842.338 kb on - strand, within AMB_RS22430at 4842.409 kb on + strand, within AMB_RS22430at 4842.409 kb on + strand, within AMB_RS22430at 4842.409 kb on + strand, within AMB_RS22430at 4842.410 kb on - strand, within AMB_RS22430at 4842.410 kb on - strand, within AMB_RS22430at 4842.410 kb on - strand, within AMB_RS22430at 4842.410 kb on - strand, within AMB_RS22430at 4842.410 kb on - strand, within AMB_RS22430at 4842.410 kb on - strand, within AMB_RS22430at 4842.411 kb on + strand, within AMB_RS22430at 4842.411 kb on + strand, within AMB_RS22430at 4842.411 kb on + strand, within AMB_RS22430at 4842.411 kb on + strand, within AMB_RS22430at 4842.412 kb on - strand, within AMB_RS22430at 4842.412 kb on - strand, within AMB_RS22430at 4842.412 kb on - strand, within AMB_RS22430at 4842.412 kb on - strand, within AMB_RS22430at 4842.478 kb on + strand, within AMB_RS22430at 4842.478 kb on + strand, within AMB_RS22430at 4842.478 kb on + strand, within AMB_RS22430at 4842.744 kb on + strand, within AMB_RS22430at 4842.744 kb on + strand, within AMB_RS22430at 4842.744 kb on + strand, within AMB_RS22430at 4842.744 kb on + strand, within AMB_RS22430at 4842.744 kb on + strand, within AMB_RS22430at 4842.745 kb on - strand, within AMB_RS22430at 4842.745 kb on - strand, within AMB_RS22430at 4842.745 kb on - strand, within AMB_RS22430at 4842.745 kb on - strand, within AMB_RS22430at 4842.745 kb on - strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.789 kb on + strand, within AMB_RS22430at 4842.790 kb on - strand, within AMB_RS22430at 4842.790 kb on - strand, within AMB_RS22430at 4842.790 kb on - strand, within AMB_RS22430at 4842.790 kb on - strand, within AMB_RS22430at 4842.790 kb on - strand, within AMB_RS22430at 4842.790 kb on - strand, within AMB_RS22430at 4842.790 kb on - strand, within AMB_RS22430at 4842.790 kb on - strand, within AMB_RS22430at 4842.790 kb on - strand, within AMB_RS22430at 4842.790 kb on - strand, within AMB_RS22430at 4842.944 kb on - strand, within AMB_RS22430at 4843.019 kb on + strand, within AMB_RS22430at 4843.020 kb on - strand, within AMB_RS22430at 4843.020 kb on - strand, within AMB_RS22430at 4843.020 kb on - strand, within AMB_RS22430at 4843.021 kb on + strand, within AMB_RS22430at 4843.021 kb on + strand, within AMB_RS22430at 4843.021 kb on + strand, within AMB_RS22430at 4843.021 kb on + strand, within AMB_RS22430at 4843.021 kb on + strand, within AMB_RS22430at 4843.021 kb on + strand, within AMB_RS22430at 4843.021 kb on + strand, within AMB_RS22430at 4843.021 kb on + strand, within AMB_RS22430at 4843.022 kb on - strand, within AMB_RS22430at 4843.022 kb on - strand, within AMB_RS22430at 4843.022 kb on - strand, within AMB_RS22430at 4843.022 kb on - strand, within AMB_RS22430at 4843.022 kb on - strand, within AMB_RS22430at 4843.025 kb on + strand, within AMB_RS22430at 4843.123 kb on + strand, within AMB_RS22430at 4843.123 kb on + strand, within AMB_RS22430at 4843.124 kb on - strand, within AMB_RS22430at 4843.214 kb on - strandat 4843.251 kb on + strandat 4843.251 kb on + strandat 4843.333 kb on + strandat 4843.334 kb on - strandat 4843.334 kb on - strandat 4843.418 kb on - strandat 4843.441 kb on + strandat 4843.442 kb on - strandat 4843.442 kb on - strandat 4843.444 kb on + strandat 4843.445 kb on - strandat 4843.452 kb on + strandat 4843.452 kb on + strandat 4843.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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4,841,744 - +0.5
4,841,744 - -0.5
4,841,744 - -2.2
4,841,744 - -1.7
4,841,744 - +0.8
4,841,772 - -1.4
4,841,776 + +0.9
4,841,812 + -1.6
4,841,829 - -0.3
4,841,829 - +0.4
4,841,974 + AMB_RS22430 0.13 -2.4
4,841,974 + AMB_RS22430 0.13 +0.6
4,841,975 - AMB_RS22430 0.13 -0.4
4,842,008 - AMB_RS22430 0.16 +0.4
4,842,008 - AMB_RS22430 0.16 -0.2
4,842,008 - AMB_RS22430 0.16 +0.6
4,842,008 - AMB_RS22430 0.16 +0.2
4,842,034 + AMB_RS22430 0.17 -2.0
4,842,053 + AMB_RS22430 0.19 -0.3
4,842,054 - AMB_RS22430 0.19 +0.0
4,842,078 + AMB_RS22430 0.20 -1.4
4,842,078 + AMB_RS22430 0.20 -2.1
4,842,078 + AMB_RS22430 0.20 +0.0
4,842,079 - AMB_RS22430 0.20 -1.7
4,842,079 - AMB_RS22430 0.20 -1.6
4,842,079 - AMB_RS22430 0.20 +0.2
4,842,103 - AMB_RS22430 0.22 +0.6
4,842,115 + AMB_RS22430 0.23 +0.2
4,842,158 + AMB_RS22430 0.26 +0.0
4,842,280 - AMB_RS22430 0.34 +0.4
4,842,280 - AMB_RS22430 0.34 -0.1
4,842,280 - AMB_RS22430 0.34 +0.2
4,842,338 - AMB_RS22430 0.38 +1.1
4,842,338 - AMB_RS22430 0.38 -2.7
4,842,409 + AMB_RS22430 0.42 -0.4
4,842,409 + AMB_RS22430 0.42 +0.1
4,842,409 + AMB_RS22430 0.42 -1.4
4,842,410 - AMB_RS22430 0.42 -0.4
4,842,410 - AMB_RS22430 0.42 -0.4
4,842,410 - AMB_RS22430 0.42 -1.6
4,842,410 - AMB_RS22430 0.42 -1.4
4,842,410 - AMB_RS22430 0.42 +0.0
4,842,410 - AMB_RS22430 0.42 +0.6
4,842,411 + AMB_RS22430 0.42 -1.2
4,842,411 + AMB_RS22430 0.42 +0.4
4,842,411 + AMB_RS22430 0.42 -0.1
4,842,411 + AMB_RS22430 0.42 +0.2
4,842,412 - AMB_RS22430 0.42 -0.1
4,842,412 - AMB_RS22430 0.42 -1.2
4,842,412 - AMB_RS22430 0.42 +0.4
4,842,412 - AMB_RS22430 0.42 -0.4
4,842,478 + AMB_RS22430 0.47 -1.0
4,842,478 + AMB_RS22430 0.47 +0.2
4,842,478 + AMB_RS22430 0.47 +1.6
4,842,744 + AMB_RS22430 0.65 +0.2
4,842,744 + AMB_RS22430 0.65 +0.4
4,842,744 + AMB_RS22430 0.65 -0.2
4,842,744 + AMB_RS22430 0.65 -2.0
4,842,744 + AMB_RS22430 0.65 +0.0
4,842,745 - AMB_RS22430 0.65 +0.4
4,842,745 - AMB_RS22430 0.65 +0.2
4,842,745 - AMB_RS22430 0.65 -0.4
4,842,745 - AMB_RS22430 0.65 +0.2
4,842,745 - AMB_RS22430 0.65 +0.3
4,842,789 + AMB_RS22430 0.68 -0.4
4,842,789 + AMB_RS22430 0.68 -0.1
4,842,789 + AMB_RS22430 0.68 -0.4
4,842,789 + AMB_RS22430 0.68 -0.7
4,842,789 + AMB_RS22430 0.68 -1.0
4,842,789 + AMB_RS22430 0.68 -1.2
4,842,789 + AMB_RS22430 0.68 -0.5
4,842,789 + AMB_RS22430 0.68 -0.3
4,842,789 + AMB_RS22430 0.68 +0.1
4,842,789 + AMB_RS22430 0.68 -0.7
4,842,789 + AMB_RS22430 0.68 +0.2
4,842,790 - AMB_RS22430 0.68 -2.0
4,842,790 - AMB_RS22430 0.68 +0.6
4,842,790 - AMB_RS22430 0.68 +0.2
4,842,790 - AMB_RS22430 0.68 +0.7
4,842,790 - AMB_RS22430 0.68 +0.2
4,842,790 - AMB_RS22430 0.68 +0.1
4,842,790 - AMB_RS22430 0.68 -0.3
4,842,790 - AMB_RS22430 0.68 -1.5
4,842,790 - AMB_RS22430 0.68 +0.0
4,842,790 - AMB_RS22430 0.68 -0.2
4,842,944 - AMB_RS22430 0.78 -0.1
4,843,019 + AMB_RS22430 0.83 -0.0
4,843,020 - AMB_RS22430 0.83 +0.2
4,843,020 - AMB_RS22430 0.83 +0.1
4,843,020 - AMB_RS22430 0.83 +0.6
4,843,021 + AMB_RS22430 0.83 -0.3
4,843,021 + AMB_RS22430 0.83 +0.0
4,843,021 + AMB_RS22430 0.83 -2.2
4,843,021 + AMB_RS22430 0.83 +0.0
4,843,021 + AMB_RS22430 0.83 -1.4
4,843,021 + AMB_RS22430 0.83 +0.0
4,843,021 + AMB_RS22430 0.83 -1.2
4,843,021 + AMB_RS22430 0.83 -1.4
4,843,022 - AMB_RS22430 0.83 +0.1
4,843,022 - AMB_RS22430 0.83 +0.1
4,843,022 - AMB_RS22430 0.83 -0.7
4,843,022 - AMB_RS22430 0.83 -0.4
4,843,022 - AMB_RS22430 0.83 -0.4
4,843,025 + AMB_RS22430 0.83 +0.0
4,843,123 + AMB_RS22430 0.90 -0.1
4,843,123 + AMB_RS22430 0.90 -0.2
4,843,124 - AMB_RS22430 0.90 -1.6
4,843,214 - +0.6
4,843,251 + +0.0
4,843,251 + -1.0
4,843,333 + +0.1
4,843,334 - -2.0
4,843,334 - -1.6
4,843,418 - +0.3
4,843,441 + +0.1
4,843,442 - -0.2
4,843,442 - -0.7
4,843,444 + -0.4
4,843,445 - -0.7
4,843,452 + +0.6
4,843,452 + -0.4
4,843,453 - +0.5

Or see this region's nucleotide sequence