Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21775

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21770 and AMB_RS21775 are separated by 82 nucleotidesAMB_RS21775 and AMB_RS24725 are separated by 126 nucleotides AMB_RS21770: AMB_RS21770 - membrane protein, at 4,711,003 to 4,712,556 _RS21770 AMB_RS21775: AMB_RS21775 - transcriptional repressor, at 4,712,639 to 4,713,058 _RS21775 AMB_RS24725: AMB_RS24725 - IS5/IS1182 family transposase, at 4,713,185 to 4,714,026 _RS24725 Position (kb) 4712 4713 4714Strain fitness (log2 ratio) -3 -2 -1 0 1at 4711.750 kb on + strand, within AMB_RS21770at 4711.750 kb on + strand, within AMB_RS21770at 4711.751 kb on - strand, within AMB_RS21770at 4711.819 kb on + strand, within AMB_RS21770at 4711.819 kb on + strand, within AMB_RS21770at 4711.819 kb on + strand, within AMB_RS21770at 4711.819 kb on + strand, within AMB_RS21770at 4711.820 kb on - strand, within AMB_RS21770at 4712.173 kb on + strand, within AMB_RS21770at 4712.173 kb on + strand, within AMB_RS21770at 4712.173 kb on + strand, within AMB_RS21770at 4712.173 kb on + strand, within AMB_RS21770at 4712.174 kb on - strand, within AMB_RS21770at 4712.174 kb on - strand, within AMB_RS21770at 4712.174 kb on - strand, within AMB_RS21770at 4712.174 kb on - strand, within AMB_RS21770at 4712.174 kb on - strand, within AMB_RS21770at 4712.229 kb on - strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.375 kb on - strand, within AMB_RS21770at 4712.379 kb on - strand, within AMB_RS21770at 4712.421 kb on + strandat 4712.421 kb on + strandat 4712.422 kb on - strandat 4712.422 kb on - strandat 4712.422 kb on - strandat 4712.431 kb on + strandat 4712.431 kb on + strandat 4712.431 kb on + strandat 4712.431 kb on + strandat 4712.432 kb on - strandat 4712.432 kb on - strandat 4712.497 kb on + strandat 4712.497 kb on + strandat 4712.497 kb on + strandat 4712.497 kb on + strandat 4712.498 kb on - strandat 4712.527 kb on + strandat 4712.555 kb on - strandat 4712.631 kb on + strandat 4712.631 kb on + strandat 4712.631 kb on + strandat 4712.631 kb on + strandat 4712.632 kb on - strandat 4712.760 kb on + strand, within AMB_RS21775at 4712.761 kb on - strand, within AMB_RS21775at 4712.761 kb on - strand, within AMB_RS21775at 4712.761 kb on - strand, within AMB_RS21775at 4712.785 kb on + strand, within AMB_RS21775at 4712.785 kb on + strand, within AMB_RS21775at 4712.786 kb on - strand, within AMB_RS21775at 4712.786 kb on - strand, within AMB_RS21775at 4712.786 kb on - strand, within AMB_RS21775at 4712.799 kb on + strand, within AMB_RS21775at 4712.799 kb on + strand, within AMB_RS21775at 4712.800 kb on - strand, within AMB_RS21775at 4712.868 kb on + strand, within AMB_RS21775at 4712.869 kb on - strand, within AMB_RS21775at 4712.869 kb on - strand, within AMB_RS21775at 4712.869 kb on - strand, within AMB_RS21775at 4712.869 kb on - strand, within AMB_RS21775at 4712.869 kb on - strand, within AMB_RS21775at 4713.033 kb on + strandat 4713.033 kb on + strandat 4713.033 kb on + strandat 4713.047 kb on - strandat 4713.047 kb on - strandat 4713.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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4,711,750 + AMB_RS21770 0.48 -0.2
4,711,750 + AMB_RS21770 0.48 -0.0
4,711,751 - AMB_RS21770 0.48 +0.1
4,711,819 + AMB_RS21770 0.53 -0.6
4,711,819 + AMB_RS21770 0.53 -3.6
4,711,819 + AMB_RS21770 0.53 -0.4
4,711,819 + AMB_RS21770 0.53 -1.9
4,711,820 - AMB_RS21770 0.53 -0.3
4,712,173 + AMB_RS21770 0.75 +0.7
4,712,173 + AMB_RS21770 0.75 -0.4
4,712,173 + AMB_RS21770 0.75 -2.1
4,712,173 + AMB_RS21770 0.75 -0.5
4,712,174 - AMB_RS21770 0.75 -0.1
4,712,174 - AMB_RS21770 0.75 -2.0
4,712,174 - AMB_RS21770 0.75 -1.4
4,712,174 - AMB_RS21770 0.75 +0.3
4,712,174 - AMB_RS21770 0.75 -2.2
4,712,229 - AMB_RS21770 0.79 +0.9
4,712,374 + AMB_RS21770 0.88 -1.0
4,712,374 + AMB_RS21770 0.88 -2.9
4,712,374 + AMB_RS21770 0.88 -1.0
4,712,374 + AMB_RS21770 0.88 +0.3
4,712,374 + AMB_RS21770 0.88 -0.4
4,712,374 + AMB_RS21770 0.88 -2.0
4,712,375 - AMB_RS21770 0.88 -2.6
4,712,379 - AMB_RS21770 0.89 +0.6
4,712,421 + -2.2
4,712,421 + +1.0
4,712,422 - -0.3
4,712,422 - -0.7
4,712,422 - +1.6
4,712,431 + -0.1
4,712,431 + -0.2
4,712,431 + -0.0
4,712,431 + +0.0
4,712,432 - +0.2
4,712,432 - +0.1
4,712,497 + +0.1
4,712,497 + +0.0
4,712,497 + -2.9
4,712,497 + +0.1
4,712,498 - +0.6
4,712,527 + -0.2
4,712,555 - +1.6
4,712,631 + -0.0
4,712,631 + -0.6
4,712,631 + -1.0
4,712,631 + -1.6
4,712,632 - -0.0
4,712,760 + AMB_RS21775 0.29 -0.2
4,712,761 - AMB_RS21775 0.29 +1.6
4,712,761 - AMB_RS21775 0.29 +0.2
4,712,761 - AMB_RS21775 0.29 -0.4
4,712,785 + AMB_RS21775 0.35 +0.5
4,712,785 + AMB_RS21775 0.35 -1.2
4,712,786 - AMB_RS21775 0.35 +0.2
4,712,786 - AMB_RS21775 0.35 +0.1
4,712,786 - AMB_RS21775 0.35 -0.8
4,712,799 + AMB_RS21775 0.38 +1.0
4,712,799 + AMB_RS21775 0.38 +0.2
4,712,800 - AMB_RS21775 0.38 +0.3
4,712,868 + AMB_RS21775 0.55 +0.1
4,712,869 - AMB_RS21775 0.55 +0.2
4,712,869 - AMB_RS21775 0.55 +1.6
4,712,869 - AMB_RS21775 0.55 -0.1
4,712,869 - AMB_RS21775 0.55 +0.0
4,712,869 - AMB_RS21775 0.55 +0.3
4,713,033 + +0.2
4,713,033 + +0.1
4,713,033 + +0.3
4,713,047 - +0.2
4,713,047 - +0.5
4,713,102 - -0.7

Or see this region's nucleotide sequence