Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23660 and AMB_RS21640 are separated by 70 nucleotides AMB_RS21640 and AMB_RS21645 overlap by 1 nucleotides AMB_RS21645 and AMB_RS21650 are separated by 18 nucleotides AMB_RS21650 and AMB_RS21655 are separated by 11 nucleotides AMB_RS21655 and AMB_RS21660 are separated by 49 nucleotides
AMB_RS23660: AMB_RS23660 - hypothetical protein, at 4,687,594 to 4,688,706
_RS23660
AMB_RS21640: AMB_RS21640 - hypothetical protein, at 4,688,777 to 4,689,067
_RS21640
AMB_RS21645: AMB_RS21645 - hypothetical protein, at 4,689,067 to 4,690,551
_RS21645
AMB_RS21650: AMB_RS21650 - hypothetical protein, at 4,690,570 to 4,690,869
_RS21650
AMB_RS21655: AMB_RS21655 - hypothetical protein, at 4,690,881 to 4,691,402
_RS21655
AMB_RS21660: AMB_RS21660 - hypothetical protein, at 4,691,452 to 4,691,952
_RS21660
Position (kb) 4689
4690
4691 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4688.187 kb on + strand, within AMB_RS23660 at 4688.188 kb on - strand, within AMB_RS23660 at 4688.340 kb on + strand, within AMB_RS23660 at 4688.384 kb on + strand, within AMB_RS23660 at 4688.385 kb on - strand, within AMB_RS23660 at 4688.385 kb on - strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.434 kb on + strand, within AMB_RS23660 at 4688.435 kb on - strand, within AMB_RS23660 at 4688.435 kb on - strand, within AMB_RS23660 at 4688.435 kb on - strand, within AMB_RS23660 at 4688.435 kb on - strand, within AMB_RS23660 at 4688.435 kb on - strand, within AMB_RS23660 at 4688.435 kb on - strand, within AMB_RS23660 at 4688.438 kb on + strand, within AMB_RS23660 at 4688.439 kb on - strand, within AMB_RS23660 at 4688.457 kb on - strand, within AMB_RS23660 at 4688.461 kb on + strand, within AMB_RS23660 at 4688.463 kb on + strand, within AMB_RS23660 at 4688.463 kb on + strand, within AMB_RS23660 at 4688.463 kb on + strand, within AMB_RS23660 at 4688.463 kb on + strand, within AMB_RS23660 at 4688.463 kb on + strand, within AMB_RS23660 at 4688.463 kb on + strand, within AMB_RS23660 at 4688.464 kb on - strand, within AMB_RS23660 at 4688.464 kb on - strand, within AMB_RS23660 at 4688.464 kb on - strand, within AMB_RS23660 at 4688.465 kb on + strand, within AMB_RS23660 at 4688.465 kb on + strand, within AMB_RS23660 at 4688.465 kb on + strand, within AMB_RS23660 at 4688.465 kb on + strand, within AMB_RS23660 at 4688.465 kb on + strand, within AMB_RS23660 at 4688.465 kb on + strand, within AMB_RS23660 at 4688.466 kb on - strand, within AMB_RS23660 at 4688.466 kb on - strand, within AMB_RS23660 at 4688.466 kb on - strand, within AMB_RS23660 at 4688.466 kb on - strand, within AMB_RS23660 at 4688.466 kb on - strand, within AMB_RS23660 at 4688.466 kb on - strand, within AMB_RS23660 at 4688.466 kb on - strand, within AMB_RS23660 at 4688.526 kb on + strand, within AMB_RS23660 at 4688.653 kb on + strand at 4688.653 kb on + strand at 4688.653 kb on + strand at 4688.658 kb on + strand at 4688.658 kb on + strand at 4688.659 kb on - strand at 4688.659 kb on - strand at 4688.659 kb on - strand at 4688.698 kb on + strand at 4688.704 kb on + strand at 4688.704 kb on + strand at 4688.705 kb on - strand at 4689.243 kb on - strand, within AMB_RS21645 at 4689.243 kb on - strand, within AMB_RS21645 at 4689.589 kb on + strand, within AMB_RS21645 at 4689.589 kb on + strand, within AMB_RS21645 at 4689.590 kb on - strand, within AMB_RS21645 at 4689.619 kb on + strand, within AMB_RS21645 at 4689.619 kb on + strand, within AMB_RS21645 at 4689.619 kb on + strand, within AMB_RS21645 at 4689.620 kb on - strand, within AMB_RS21645 at 4689.620 kb on - strand, within AMB_RS21645 at 4689.620 kb on - strand, within AMB_RS21645 at 4689.640 kb on + strand, within AMB_RS21645 at 4689.640 kb on + strand, within AMB_RS21645 at 4689.640 kb on + strand, within AMB_RS21645 at 4689.641 kb on - strand, within AMB_RS21645 at 4689.641 kb on - strand, within AMB_RS21645 at 4689.643 kb on + strand, within AMB_RS21645 at 4689.643 kb on + strand, within AMB_RS21645 at 4689.644 kb on - strand, within AMB_RS21645 at 4689.644 kb on - strand, within AMB_RS21645 at 4689.644 kb on - strand, within AMB_RS21645 at 4689.644 kb on - strand, within AMB_RS21645 at 4689.652 kb on + strand, within AMB_RS21645 at 4689.652 kb on + strand, within AMB_RS21645 at 4689.653 kb on - strand, within AMB_RS21645 at 4689.653 kb on - strand, within AMB_RS21645 at 4689.653 kb on - strand, within AMB_RS21645 at 4689.653 kb on - strand, within AMB_RS21645 at 4689.889 kb on + strand, within AMB_RS21645 at 4689.890 kb on - strand, within AMB_RS21645 at 4689.890 kb on - strand, within AMB_RS21645 at 4689.988 kb on + strand, within AMB_RS21645 at 4690.054 kb on + strand, within AMB_RS21645 at 4690.055 kb on - strand, within AMB_RS21645 at 4690.055 kb on - strand, within AMB_RS21645 at 4690.076 kb on - strand, within AMB_RS21645 at 4690.076 kb on - strand, within AMB_RS21645 at 4690.179 kb on - strand, within AMB_RS21645 at 4690.179 kb on - strand, within AMB_RS21645 at 4690.317 kb on - strand, within AMB_RS21645 at 4690.745 kb on - strand, within AMB_RS21650 at 4690.768 kb on + strand, within AMB_RS21650 at 4690.768 kb on + strand, within AMB_RS21650 at 4690.768 kb on + strand, within AMB_RS21650 at 4690.768 kb on + strand, within AMB_RS21650 at 4690.769 kb on - strand, within AMB_RS21650 at 4690.769 kb on - strand, within AMB_RS21650 at 4690.769 kb on - strand, within AMB_RS21650 at 4690.769 kb on - strand, within AMB_RS21650 at 4690.868 kb on - strand at 4691.184 kb on + strand, within AMB_RS21655 at 4691.184 kb on + strand, within AMB_RS21655 at 4691.185 kb on - strand, within AMB_RS21655
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 4,688,187 + AMB_RS23660 0.53 -1.4 4,688,188 - AMB_RS23660 0.53 +1.6 4,688,340 + AMB_RS23660 0.67 -1.0 4,688,384 + AMB_RS23660 0.71 -0.7 4,688,385 - AMB_RS23660 0.71 -1.2 4,688,385 - AMB_RS23660 0.71 -0.4 4,688,434 + AMB_RS23660 0.75 -0.6 4,688,434 + AMB_RS23660 0.75 -1.2 4,688,434 + AMB_RS23660 0.75 -2.1 4,688,434 + AMB_RS23660 0.75 +0.7 4,688,434 + AMB_RS23660 0.75 -0.4 4,688,434 + AMB_RS23660 0.75 +0.6 4,688,434 + AMB_RS23660 0.75 -0.8 4,688,434 + AMB_RS23660 0.75 +0.4 4,688,434 + AMB_RS23660 0.75 -1.2 4,688,434 + AMB_RS23660 0.75 +0.7 4,688,434 + AMB_RS23660 0.75 -0.4 4,688,434 + AMB_RS23660 0.75 -0.0 4,688,435 - AMB_RS23660 0.76 +0.4 4,688,435 - AMB_RS23660 0.76 -2.5 4,688,435 - AMB_RS23660 0.76 -0.1 4,688,435 - AMB_RS23660 0.76 -2.6 4,688,435 - AMB_RS23660 0.76 -0.9 4,688,435 - AMB_RS23660 0.76 -1.0 4,688,438 + AMB_RS23660 0.76 -1.0 4,688,439 - AMB_RS23660 0.76 +0.2 4,688,457 - AMB_RS23660 0.78 -1.0 4,688,461 + AMB_RS23660 0.78 -1.4 4,688,463 + AMB_RS23660 0.78 -0.3 4,688,463 + AMB_RS23660 0.78 +1.3 4,688,463 + AMB_RS23660 0.78 -0.8 4,688,463 + AMB_RS23660 0.78 -0.4 4,688,463 + AMB_RS23660 0.78 -0.0 4,688,463 + AMB_RS23660 0.78 +0.5 4,688,464 - AMB_RS23660 0.78 -0.9 4,688,464 - AMB_RS23660 0.78 -0.4 4,688,464 - AMB_RS23660 0.78 -0.6 4,688,465 + AMB_RS23660 0.78 -0.2 4,688,465 + AMB_RS23660 0.78 -0.4 4,688,465 + AMB_RS23660 0.78 -0.7 4,688,465 + AMB_RS23660 0.78 +1.6 4,688,465 + AMB_RS23660 0.78 +0.3 4,688,465 + AMB_RS23660 0.78 -0.2 4,688,466 - AMB_RS23660 0.78 +0.6 4,688,466 - AMB_RS23660 0.78 -2.4 4,688,466 - AMB_RS23660 0.78 -0.4 4,688,466 - AMB_RS23660 0.78 -0.4 4,688,466 - AMB_RS23660 0.78 +0.6 4,688,466 - AMB_RS23660 0.78 -1.6 4,688,466 - AMB_RS23660 0.78 -0.9 4,688,526 + AMB_RS23660 0.84 +0.1 4,688,653 + -2.4 4,688,653 + +0.6 4,688,653 + +0.9 4,688,658 + -0.2 4,688,658 + +0.5 4,688,659 - -0.4 4,688,659 - -0.3 4,688,659 - +0.2 4,688,698 + -0.0 4,688,704 + +0.3 4,688,704 + -0.1 4,688,705 - +0.6 4,689,243 - AMB_RS21645 0.12 -1.0 4,689,243 - AMB_RS21645 0.12 -0.0 4,689,589 + AMB_RS21645 0.35 -1.0 4,689,589 + AMB_RS21645 0.35 -0.8 4,689,590 - AMB_RS21645 0.35 -1.0 4,689,619 + AMB_RS21645 0.37 +0.6 4,689,619 + AMB_RS21645 0.37 -0.6 4,689,619 + AMB_RS21645 0.37 -1.0 4,689,620 - AMB_RS21645 0.37 -0.8 4,689,620 - AMB_RS21645 0.37 +0.0 4,689,620 - AMB_RS21645 0.37 +1.0 4,689,640 + AMB_RS21645 0.39 -0.0 4,689,640 + AMB_RS21645 0.39 -1.4 4,689,640 + AMB_RS21645 0.39 -0.4 4,689,641 - AMB_RS21645 0.39 -0.4 4,689,641 - AMB_RS21645 0.39 -0.1 4,689,643 + AMB_RS21645 0.39 -0.1 4,689,643 + AMB_RS21645 0.39 -2.3 4,689,644 - AMB_RS21645 0.39 -1.8 4,689,644 - AMB_RS21645 0.39 -1.6 4,689,644 - AMB_RS21645 0.39 +0.4 4,689,644 - AMB_RS21645 0.39 -0.0 4,689,652 + AMB_RS21645 0.39 -2.9 4,689,652 + AMB_RS21645 0.39 -1.1 4,689,653 - AMB_RS21645 0.39 -0.1 4,689,653 - AMB_RS21645 0.39 +0.0 4,689,653 - AMB_RS21645 0.39 -0.8 4,689,653 - AMB_RS21645 0.39 -0.8 4,689,889 + AMB_RS21645 0.55 +0.4 4,689,890 - AMB_RS21645 0.55 -1.2 4,689,890 - AMB_RS21645 0.55 -1.4 4,689,988 + AMB_RS21645 0.62 +0.1 4,690,054 + AMB_RS21645 0.66 +0.1 4,690,055 - AMB_RS21645 0.67 +0.4 4,690,055 - AMB_RS21645 0.67 -0.0 4,690,076 - AMB_RS21645 0.68 +0.1 4,690,076 - AMB_RS21645 0.68 -1.2 4,690,179 - AMB_RS21645 0.75 +0.2 4,690,179 - AMB_RS21645 0.75 +0.7 4,690,317 - AMB_RS21645 0.84 -0.5 4,690,745 - AMB_RS21650 0.58 +1.6 4,690,768 + AMB_RS21650 0.66 +1.6 4,690,768 + AMB_RS21650 0.66 +0.2 4,690,768 + AMB_RS21650 0.66 -0.8 4,690,768 + AMB_RS21650 0.66 -1.6 4,690,769 - AMB_RS21650 0.66 +0.2 4,690,769 - AMB_RS21650 0.66 -0.4 4,690,769 - AMB_RS21650 0.66 -0.0 4,690,769 - AMB_RS21650 0.66 -0.0 4,690,868 - +0.3 4,691,184 + AMB_RS21655 0.58 -0.4 4,691,184 + AMB_RS21655 0.58 -0.6 4,691,185 - AMB_RS21655 0.58 -0.1
Or see this region's nucleotide sequence