Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20900

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20890 and AMB_RS20895 overlap by 8 nucleotidesAMB_RS20895 and AMB_RS20900 are separated by 3 nucleotidesAMB_RS20900 and AMB_RS20905 are separated by 66 nucleotides AMB_RS20890: AMB_RS20890 - iron-sulfur cluster-binding protein, at 4,535,397 to 4,536,833 _RS20890 AMB_RS20895: AMB_RS20895 - lactate utilization protein, at 4,536,826 to 4,537,476 _RS20895 AMB_RS20900: AMB_RS20900 - FAD-binding oxidoreductase, at 4,537,480 to 4,540,290 _RS20900 AMB_RS20905: AMB_RS20905 - enoyl-CoA hydratase/carnithine racemase, at 4,540,357 to 4,541,121 _RS20905 Position (kb) 4537 4538 4539 4540 4541Strain fitness (log2 ratio) -3 -2 -1 0 1at 4536.660 kb on + strand, within AMB_RS20890at 4536.660 kb on + strand, within AMB_RS20890at 4536.660 kb on + strand, within AMB_RS20890at 4536.661 kb on - strand, within AMB_RS20890at 4536.661 kb on - strand, within AMB_RS20890at 4536.678 kb on + strand, within AMB_RS20890at 4536.819 kb on + strandat 4536.819 kb on + strandat 4536.819 kb on + strandat 4536.820 kb on - strandat 4536.831 kb on + strandat 4536.832 kb on - strandat 4536.846 kb on + strandat 4536.846 kb on + strandat 4536.847 kb on - strandat 4536.847 kb on - strandat 4536.917 kb on - strand, within AMB_RS20895at 4536.917 kb on - strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.048 kb on - strand, within AMB_RS20895at 4537.048 kb on - strand, within AMB_RS20895at 4537.048 kb on - strand, within AMB_RS20895at 4537.048 kb on - strand, within AMB_RS20895at 4537.054 kb on + strand, within AMB_RS20895at 4537.054 kb on + strand, within AMB_RS20895at 4537.054 kb on + strand, within AMB_RS20895at 4537.055 kb on - strand, within AMB_RS20895at 4537.126 kb on + strand, within AMB_RS20895at 4537.126 kb on + strand, within AMB_RS20895at 4537.126 kb on + strand, within AMB_RS20895at 4537.127 kb on - strand, within AMB_RS20895at 4537.127 kb on - strand, within AMB_RS20895at 4537.127 kb on - strand, within AMB_RS20895at 4537.423 kb on + strandat 4537.423 kb on + strandat 4537.423 kb on + strandat 4537.424 kb on - strandat 4537.424 kb on - strandat 4537.501 kb on + strandat 4537.502 kb on - strandat 4537.579 kb on + strandat 4537.580 kb on - strandat 4537.600 kb on + strandat 4537.757 kb on + strandat 4537.757 kb on + strandat 4537.757 kb on + strandat 4537.758 kb on - strandat 4537.959 kb on + strand, within AMB_RS20900at 4537.959 kb on + strand, within AMB_RS20900at 4537.959 kb on + strand, within AMB_RS20900at 4538.269 kb on + strand, within AMB_RS20900at 4538.270 kb on - strand, within AMB_RS20900at 4538.590 kb on + strand, within AMB_RS20900at 4538.591 kb on - strand, within AMB_RS20900at 4538.591 kb on - strand, within AMB_RS20900at 4538.596 kb on + strand, within AMB_RS20900at 4538.596 kb on + strand, within AMB_RS20900at 4538.597 kb on - strand, within AMB_RS20900at 4538.597 kb on - strand, within AMB_RS20900at 4538.753 kb on - strand, within AMB_RS20900at 4538.845 kb on + strand, within AMB_RS20900at 4538.846 kb on - strand, within AMB_RS20900at 4538.846 kb on - strand, within AMB_RS20900at 4538.890 kb on + strand, within AMB_RS20900at 4538.890 kb on + strand, within AMB_RS20900at 4539.247 kb on + strand, within AMB_RS20900at 4539.253 kb on + strand, within AMB_RS20900at 4539.253 kb on + strand, within AMB_RS20900at 4539.604 kb on + strand, within AMB_RS20900at 4539.604 kb on + strand, within AMB_RS20900at 4539.604 kb on + strand, within AMB_RS20900at 4539.604 kb on + strand, within AMB_RS20900at 4539.605 kb on - strand, within AMB_RS20900at 4539.605 kb on - strand, within AMB_RS20900at 4539.605 kb on - strand, within AMB_RS20900at 4539.605 kb on - strand, within AMB_RS20900at 4539.605 kb on - strand, within AMB_RS20900at 4539.892 kb on + strand, within AMB_RS20900at 4539.892 kb on + strand, within AMB_RS20900at 4539.892 kb on + strand, within AMB_RS20900at 4539.892 kb on + strand, within AMB_RS20900at 4539.893 kb on - strand, within AMB_RS20900at 4539.893 kb on - strand, within AMB_RS20900at 4539.893 kb on - strand, within AMB_RS20900at 4539.893 kb on - strand, within AMB_RS20900at 4539.893 kb on - strand, within AMB_RS20900at 4539.893 kb on - strand, within AMB_RS20900at 4540.195 kb on + strandat 4540.195 kb on + strandat 4540.195 kb on + strandat 4540.195 kb on + strandat 4540.195 kb on + strandat 4540.250 kb on - strandat 4540.264 kb on + strandat 4540.264 kb on + strandat 4540.334 kb on + strandat 4540.334 kb on + strandat 4540.334 kb on + strandat 4540.334 kb on + strandat 4540.335 kb on - strandat 4540.339 kb on - strandat 4540.339 kb on - strandat 4540.370 kb on + strandat 4540.370 kb on + strandat 4540.370 kb on + strandat 4540.370 kb on + strandat 4540.371 kb on - strandat 4540.371 kb on - strandat 4540.371 kb on - strandat 4540.371 kb on - strandat 4540.371 kb on - strandat 4540.450 kb on + strand, within AMB_RS20905at 4540.450 kb on + strand, within AMB_RS20905at 4540.450 kb on + strand, within AMB_RS20905at 4540.451 kb on - strand, within AMB_RS20905at 4540.705 kb on + strand, within AMB_RS20905at 4540.705 kb on + strand, within AMB_RS20905at 4540.705 kb on + strand, within AMB_RS20905at 4540.705 kb on + strand, within AMB_RS20905at 4540.705 kb on + strand, within AMB_RS20905at 4540.705 kb on + strand, within AMB_RS20905at 4540.705 kb on + strand, within AMB_RS20905at 4540.706 kb on - strand, within AMB_RS20905at 4541.254 kb on + strandat 4541.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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4,536,660 + AMB_RS20890 0.88 -0.6
4,536,660 + AMB_RS20890 0.88 +0.4
4,536,660 + AMB_RS20890 0.88 +0.1
4,536,661 - AMB_RS20890 0.88 -0.3
4,536,661 - AMB_RS20890 0.88 +0.5
4,536,678 + AMB_RS20890 0.89 -0.1
4,536,819 + +0.4
4,536,819 + +0.0
4,536,819 + -0.5
4,536,820 - -3.1
4,536,831 + +0.1
4,536,832 - -1.9
4,536,846 + -1.6
4,536,846 + -0.0
4,536,847 - -0.4
4,536,847 - -0.1
4,536,917 - AMB_RS20895 0.14 -0.1
4,536,917 - AMB_RS20895 0.14 -0.3
4,537,047 + AMB_RS20895 0.34 -0.2
4,537,047 + AMB_RS20895 0.34 +0.4
4,537,047 + AMB_RS20895 0.34 -2.1
4,537,047 + AMB_RS20895 0.34 +0.0
4,537,047 + AMB_RS20895 0.34 -0.1
4,537,047 + AMB_RS20895 0.34 -0.5
4,537,047 + AMB_RS20895 0.34 -2.3
4,537,047 + AMB_RS20895 0.34 +0.1
4,537,047 + AMB_RS20895 0.34 +0.6
4,537,047 + AMB_RS20895 0.34 -0.6
4,537,048 - AMB_RS20895 0.34 +0.8
4,537,048 - AMB_RS20895 0.34 -0.2
4,537,048 - AMB_RS20895 0.34 +0.3
4,537,048 - AMB_RS20895 0.34 +0.0
4,537,054 + AMB_RS20895 0.35 -0.1
4,537,054 + AMB_RS20895 0.35 +0.5
4,537,054 + AMB_RS20895 0.35 -0.1
4,537,055 - AMB_RS20895 0.35 -1.5
4,537,126 + AMB_RS20895 0.46 -0.5
4,537,126 + AMB_RS20895 0.46 +0.2
4,537,126 + AMB_RS20895 0.46 -1.3
4,537,127 - AMB_RS20895 0.46 +0.2
4,537,127 - AMB_RS20895 0.46 -0.1
4,537,127 - AMB_RS20895 0.46 -1.1
4,537,423 + -0.3
4,537,423 + -0.5
4,537,423 + -0.3
4,537,424 - -0.0
4,537,424 - +0.6
4,537,501 + +0.0
4,537,502 - -0.1
4,537,579 + +0.4
4,537,580 - -0.2
4,537,600 + -0.4
4,537,757 + +0.5
4,537,757 + -0.8
4,537,757 + -0.4
4,537,758 - +0.2
4,537,959 + AMB_RS20900 0.17 +0.9
4,537,959 + AMB_RS20900 0.17 +0.7
4,537,959 + AMB_RS20900 0.17 +0.4
4,538,269 + AMB_RS20900 0.28 +0.5
4,538,270 - AMB_RS20900 0.28 -2.1
4,538,590 + AMB_RS20900 0.39 +0.0
4,538,591 - AMB_RS20900 0.40 +0.1
4,538,591 - AMB_RS20900 0.40 -0.5
4,538,596 + AMB_RS20900 0.40 -1.2
4,538,596 + AMB_RS20900 0.40 +0.1
4,538,597 - AMB_RS20900 0.40 +0.2
4,538,597 - AMB_RS20900 0.40 -1.5
4,538,753 - AMB_RS20900 0.45 -0.5
4,538,845 + AMB_RS20900 0.49 -0.8
4,538,846 - AMB_RS20900 0.49 -0.6
4,538,846 - AMB_RS20900 0.49 +0.4
4,538,890 + AMB_RS20900 0.50 +0.2
4,538,890 + AMB_RS20900 0.50 -1.1
4,539,247 + AMB_RS20900 0.63 -0.7
4,539,253 + AMB_RS20900 0.63 -1.9
4,539,253 + AMB_RS20900 0.63 +0.6
4,539,604 + AMB_RS20900 0.76 -0.2
4,539,604 + AMB_RS20900 0.76 +0.3
4,539,604 + AMB_RS20900 0.76 -0.4
4,539,604 + AMB_RS20900 0.76 -0.4
4,539,605 - AMB_RS20900 0.76 +0.1
4,539,605 - AMB_RS20900 0.76 -1.3
4,539,605 - AMB_RS20900 0.76 -2.2
4,539,605 - AMB_RS20900 0.76 +0.5
4,539,605 - AMB_RS20900 0.76 +0.5
4,539,892 + AMB_RS20900 0.86 -0.5
4,539,892 + AMB_RS20900 0.86 +0.6
4,539,892 + AMB_RS20900 0.86 +0.1
4,539,892 + AMB_RS20900 0.86 +0.3
4,539,893 - AMB_RS20900 0.86 -1.3
4,539,893 - AMB_RS20900 0.86 +0.4
4,539,893 - AMB_RS20900 0.86 -0.2
4,539,893 - AMB_RS20900 0.86 +0.1
4,539,893 - AMB_RS20900 0.86 -2.1
4,539,893 - AMB_RS20900 0.86 +0.0
4,540,195 + +1.5
4,540,195 + -1.5
4,540,195 + +0.7
4,540,195 + -1.1
4,540,195 + +0.5
4,540,250 - -0.8
4,540,264 + -2.3
4,540,264 + -0.5
4,540,334 + -0.5
4,540,334 + -1.9
4,540,334 + -0.5
4,540,334 + -1.8
4,540,335 - -0.0
4,540,339 - +0.5
4,540,339 - -0.1
4,540,370 + +0.2
4,540,370 + +0.2
4,540,370 + +0.7
4,540,370 + +1.5
4,540,371 - -0.1
4,540,371 - -0.8
4,540,371 - -0.5
4,540,371 - +0.3
4,540,371 - -0.1
4,540,450 + AMB_RS20905 0.12 -1.8
4,540,450 + AMB_RS20905 0.12 +0.5
4,540,450 + AMB_RS20905 0.12 +0.4
4,540,451 - AMB_RS20905 0.12 -0.2
4,540,705 + AMB_RS20905 0.45 -0.8
4,540,705 + AMB_RS20905 0.45 +0.1
4,540,705 + AMB_RS20905 0.45 -0.2
4,540,705 + AMB_RS20905 0.45 -1.1
4,540,705 + AMB_RS20905 0.45 -0.5
4,540,705 + AMB_RS20905 0.45 -0.8
4,540,705 + AMB_RS20905 0.45 +0.6
4,540,706 - AMB_RS20905 0.46 +0.3
4,541,254 + -0.8
4,541,255 - -0.2

Or see this region's nucleotide sequence