Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19575 and AMB_RS19580 are separated by 1 nucleotides AMB_RS19580 and AMB_RS19585 are separated by 117 nucleotides AMB_RS19585 and AMB_RS19590 are separated by 1 nucleotides AMB_RS19590 and AMB_RS19595 are separated by 165 nucleotides
AMB_RS19575: AMB_RS19575 - Mg2+/Co2+ transporter, at 4,276,266 to 4,277,246
_RS19575
AMB_RS19580: AMB_RS19580 - hypothetical protein, at 4,277,248 to 4,277,682
_RS19580
AMB_RS19585: AMB_RS19585 - tetratricopeptide repeat protein, at 4,277,800 to 4,279,158
_RS19585
AMB_RS19590: AMB_RS19590 - peptidylprolyl isomerase, at 4,279,160 to 4,279,642
_RS19590
AMB_RS19595: AMB_RS19595 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 4,279,808 to 4,280,650
_RS19595
Position (kb) 4277
4278
4279
4280 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4276.980 kb on + strand, within AMB_RS19575 at 4277.121 kb on + strand, within AMB_RS19575 at 4277.169 kb on + strand at 4277.169 kb on + strand at 4277.170 kb on - strand at 4277.170 kb on - strand at 4277.170 kb on - strand at 4277.170 kb on - strand at 4277.175 kb on + strand at 4277.175 kb on + strand at 4277.176 kb on - strand at 4277.176 kb on - strand at 4277.215 kb on - strand at 4277.244 kb on + strand at 4277.244 kb on + strand at 4277.245 kb on - strand at 4277.245 kb on - strand at 4277.245 kb on - strand at 4277.294 kb on + strand, within AMB_RS19580 at 4277.322 kb on - strand, within AMB_RS19580 at 4277.322 kb on - strand, within AMB_RS19580 at 4277.720 kb on + strand at 4277.811 kb on + strand at 4277.811 kb on + strand at 4277.811 kb on + strand at 4277.811 kb on + strand at 4277.812 kb on - strand at 4277.812 kb on - strand at 4277.999 kb on - strand, within AMB_RS19585 at 4278.145 kb on + strand, within AMB_RS19585 at 4278.272 kb on - strand, within AMB_RS19585 at 4278.272 kb on - strand, within AMB_RS19585 at 4278.272 kb on - strand, within AMB_RS19585 at 4278.442 kb on + strand, within AMB_RS19585 at 4278.442 kb on + strand, within AMB_RS19585 at 4278.442 kb on + strand, within AMB_RS19585 at 4278.443 kb on - strand, within AMB_RS19585 at 4278.646 kb on + strand, within AMB_RS19585 at 4278.647 kb on - strand, within AMB_RS19585 at 4278.805 kb on + strand, within AMB_RS19585 at 4279.006 kb on + strand, within AMB_RS19585 at 4279.007 kb on - strand, within AMB_RS19585 at 4279.007 kb on - strand, within AMB_RS19585 at 4279.007 kb on - strand, within AMB_RS19585 at 4279.159 kb on + strand at 4279.159 kb on + strand at 4279.159 kb on + strand at 4279.159 kb on + strand at 4279.159 kb on + strand at 4279.159 kb on + strand at 4279.160 kb on - strand at 4279.160 kb on - strand at 4279.160 kb on - strand at 4279.160 kb on - strand at 4279.160 kb on - strand at 4279.160 kb on - strand at 4279.160 kb on - strand at 4279.160 kb on - strand at 4279.196 kb on + strand at 4279.196 kb on + strand at 4279.253 kb on + strand, within AMB_RS19590 at 4279.254 kb on - strand, within AMB_RS19590 at 4279.254 kb on - strand, within AMB_RS19590 at 4279.254 kb on - strand, within AMB_RS19590 at 4279.254 kb on - strand, within AMB_RS19590 at 4279.367 kb on + strand, within AMB_RS19590 at 4279.367 kb on + strand, within AMB_RS19590 at 4279.368 kb on - strand, within AMB_RS19590 at 4279.619 kb on + strand at 4279.641 kb on - strand at 4279.763 kb on + strand at 4279.790 kb on + strand at 4279.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 4,276,980 + AMB_RS19575 0.73 -0.8 4,277,121 + AMB_RS19575 0.87 +1.1 4,277,169 + +0.4 4,277,169 + -0.1 4,277,170 - +0.8 4,277,170 - -1.3 4,277,170 - +0.5 4,277,170 - +0.2 4,277,175 + -0.5 4,277,175 + -2.4 4,277,176 - +0.4 4,277,176 - -1.7 4,277,215 - -0.1 4,277,244 + -2.0 4,277,244 + -2.1 4,277,245 - -0.8 4,277,245 - -0.7 4,277,245 - -1.6 4,277,294 + AMB_RS19580 0.11 +0.2 4,277,322 - AMB_RS19580 0.17 -0.7 4,277,322 - AMB_RS19580 0.17 -1.5 4,277,720 + -1.1 4,277,811 + +0.2 4,277,811 + -0.3 4,277,811 + -0.1 4,277,811 + +0.3 4,277,812 - +0.2 4,277,812 - -0.1 4,277,999 - AMB_RS19585 0.15 +0.0 4,278,145 + AMB_RS19585 0.25 +0.4 4,278,272 - AMB_RS19585 0.35 -0.6 4,278,272 - AMB_RS19585 0.35 -0.3 4,278,272 - AMB_RS19585 0.35 +0.4 4,278,442 + AMB_RS19585 0.47 -1.5 4,278,442 + AMB_RS19585 0.47 -0.5 4,278,442 + AMB_RS19585 0.47 -2.3 4,278,443 - AMB_RS19585 0.47 -0.8 4,278,646 + AMB_RS19585 0.62 -1.5 4,278,647 - AMB_RS19585 0.62 -0.5 4,278,805 + AMB_RS19585 0.74 -0.5 4,279,006 + AMB_RS19585 0.89 -1.1 4,279,007 - AMB_RS19585 0.89 -2.0 4,279,007 - AMB_RS19585 0.89 -0.1 4,279,007 - AMB_RS19585 0.89 -0.9 4,279,159 + -0.3 4,279,159 + -0.3 4,279,159 + -1.1 4,279,159 + +0.3 4,279,159 + -0.1 4,279,159 + +0.7 4,279,160 - -1.5 4,279,160 - -0.3 4,279,160 - -0.8 4,279,160 - -0.1 4,279,160 - -1.7 4,279,160 - +0.5 4,279,160 - -0.1 4,279,160 - +1.5 4,279,196 + +0.2 4,279,196 + -0.2 4,279,253 + AMB_RS19590 0.19 +0.5 4,279,254 - AMB_RS19590 0.19 -3.0 4,279,254 - AMB_RS19590 0.19 -1.3 4,279,254 - AMB_RS19590 0.19 -2.1 4,279,254 - AMB_RS19590 0.19 +0.8 4,279,367 + AMB_RS19590 0.43 +0.6 4,279,367 + AMB_RS19590 0.43 +0.2 4,279,368 - AMB_RS19590 0.43 -1.3 4,279,619 + -0.3 4,279,641 - -3.1 4,279,763 + +0.5 4,279,790 + -0.5 4,279,790 + -1.1
Or see this region's nucleotide sequence