Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15790

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15785 and AMB_RS15790 are separated by 18 nucleotidesAMB_RS15790 and AMB_RS15795 are separated by 12 nucleotidesAMB_RS15795 and AMB_RS15800 are separated by 319 nucleotides AMB_RS15785: AMB_RS15785 - elongation factor G, at 3,378,656 to 3,380,740 _RS15785 AMB_RS15790: AMB_RS15790 - 30S ribosomal protein S7, at 3,380,759 to 3,381,229 _RS15790 AMB_RS15795: AMB_RS15795 - 30S ribosomal protein S12, at 3,381,242 to 3,381,613 _RS15795 AMB_RS15800: AMB_RS15800 - lytic transglycosylase domain-containing protein, at 3,381,933 to 3,382,889 _RS15800 Position (kb) 3380 3381 3382Strain fitness (log2 ratio) -2 -1 0 1at 3381.899 kb on + strandat 3381.899 kb on + strandat 3381.900 kb on - strandat 3381.900 kb on - strandat 3381.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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3,381,899 + -1.4
3,381,899 + -1.6
3,381,900 - -0.3
3,381,900 - -1.9
3,381,900 - -1.2

Or see this region's nucleotide sequence