Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07510

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07505 and AMB_RS07510 are separated by 16 nucleotidesAMB_RS07510 and AMB_RS07515 are separated by 11 nucleotides AMB_RS07505: AMB_RS07505 - adenine deaminase, at 1,624,999 to 1,626,201 _RS07505 AMB_RS07510: AMB_RS07510 - CoA transferase, at 1,626,218 to 1,627,423 _RS07510 AMB_RS07515: AMB_RS07515 - aldehyde ferredoxin oxidoreductase, at 1,627,435 to 1,629,144 _RS07515 Position (kb) 1626 1627 1628Strain fitness (log2 ratio) -3 -2 -1 0 1at 1625.541 kb on - strand, within AMB_RS07505at 1625.592 kb on + strand, within AMB_RS07505at 1625.593 kb on - strand, within AMB_RS07505at 1625.593 kb on - strand, within AMB_RS07505at 1625.596 kb on + strand, within AMB_RS07505at 1625.597 kb on - strand, within AMB_RS07505at 1625.597 kb on - strand, within AMB_RS07505at 1625.716 kb on - strand, within AMB_RS07505at 1625.716 kb on - strand, within AMB_RS07505at 1625.771 kb on + strand, within AMB_RS07505at 1625.771 kb on + strand, within AMB_RS07505at 1625.771 kb on + strand, within AMB_RS07505at 1625.772 kb on - strand, within AMB_RS07505at 1625.772 kb on - strand, within AMB_RS07505at 1625.979 kb on + strand, within AMB_RS07505at 1625.980 kb on - strand, within AMB_RS07505at 1626.199 kb on + strandat 1626.199 kb on + strandat 1626.407 kb on + strand, within AMB_RS07510at 1626.407 kb on + strand, within AMB_RS07510at 1626.408 kb on - strand, within AMB_RS07510at 1626.408 kb on - strand, within AMB_RS07510at 1626.408 kb on - strand, within AMB_RS07510at 1626.408 kb on - strand, within AMB_RS07510at 1626.410 kb on + strand, within AMB_RS07510at 1626.410 kb on + strand, within AMB_RS07510at 1626.410 kb on + strand, within AMB_RS07510at 1626.410 kb on + strand, within AMB_RS07510at 1626.410 kb on + strand, within AMB_RS07510at 1626.410 kb on + strand, within AMB_RS07510at 1626.411 kb on - strand, within AMB_RS07510at 1626.411 kb on - strand, within AMB_RS07510at 1626.411 kb on - strand, within AMB_RS07510at 1626.545 kb on + strand, within AMB_RS07510at 1626.545 kb on + strand, within AMB_RS07510at 1626.545 kb on + strand, within AMB_RS07510at 1626.545 kb on + strand, within AMB_RS07510at 1626.545 kb on + strand, within AMB_RS07510at 1626.545 kb on + strand, within AMB_RS07510at 1626.546 kb on - strand, within AMB_RS07510at 1626.557 kb on + strand, within AMB_RS07510at 1626.593 kb on + strand, within AMB_RS07510at 1626.593 kb on + strand, within AMB_RS07510at 1626.594 kb on - strand, within AMB_RS07510at 1626.629 kb on + strand, within AMB_RS07510at 1626.630 kb on - strand, within AMB_RS07510at 1626.647 kb on + strand, within AMB_RS07510at 1626.648 kb on - strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.755 kb on + strand, within AMB_RS07510at 1626.756 kb on - strand, within AMB_RS07510at 1626.756 kb on - strand, within AMB_RS07510at 1626.756 kb on - strand, within AMB_RS07510at 1626.875 kb on + strand, within AMB_RS07510at 1626.876 kb on - strand, within AMB_RS07510at 1626.926 kb on - strand, within AMB_RS07510at 1626.935 kb on + strand, within AMB_RS07510at 1626.935 kb on + strand, within AMB_RS07510at 1626.936 kb on - strand, within AMB_RS07510at 1627.049 kb on + strand, within AMB_RS07510at 1627.050 kb on - strand, within AMB_RS07510at 1627.133 kb on + strand, within AMB_RS07510at 1627.313 kb on + strandat 1627.314 kb on - strandat 1627.314 kb on - strandat 1627.314 kb on - strandat 1627.314 kb on - strandat 1627.314 kb on - strandat 1627.422 kb on - strandat 1627.422 kb on - strandat 1627.422 kb on - strandat 1627.522 kb on + strandat 1627.523 kb on - strandat 1627.523 kb on - strandat 1627.612 kb on + strand, within AMB_RS07515at 1627.828 kb on + strand, within AMB_RS07515at 1628.047 kb on - strand, within AMB_RS07515at 1628.047 kb on - strand, within AMB_RS07515at 1628.047 kb on - strand, within AMB_RS07515at 1628.101 kb on + strand, within AMB_RS07515at 1628.182 kb on + strand, within AMB_RS07515at 1628.182 kb on + strand, within AMB_RS07515at 1628.182 kb on + strand, within AMB_RS07515at 1628.182 kb on + strand, within AMB_RS07515at 1628.182 kb on + strand, within AMB_RS07515at 1628.183 kb on - strand, within AMB_RS07515at 1628.183 kb on - strand, within AMB_RS07515at 1628.183 kb on - strand, within AMB_RS07515at 1628.266 kb on + strand, within AMB_RS07515at 1628.266 kb on + strand, within AMB_RS07515at 1628.266 kb on + strand, within AMB_RS07515at 1628.266 kb on + strand, within AMB_RS07515at 1628.267 kb on - strand, within AMB_RS07515at 1628.267 kb on - strand, within AMB_RS07515at 1628.267 kb on - strand, within AMB_RS07515at 1628.268 kb on + strand, within AMB_RS07515at 1628.268 kb on + strand, within AMB_RS07515at 1628.268 kb on + strand, within AMB_RS07515at 1628.269 kb on - strand, within AMB_RS07515at 1628.269 kb on - strand, within AMB_RS07515at 1628.269 kb on - strand, within AMB_RS07515at 1628.350 kb on + strand, within AMB_RS07515at 1628.350 kb on + strand, within AMB_RS07515at 1628.350 kb on + strand, within AMB_RS07515at 1628.351 kb on - strand, within AMB_RS07515at 1628.351 kb on - strand, within AMB_RS07515at 1628.351 kb on - strand, within AMB_RS07515at 1628.351 kb on - strand, within AMB_RS07515at 1628.393 kb on - strand, within AMB_RS07515

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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1,625,541 - AMB_RS07505 0.45 +0.4
1,625,592 + AMB_RS07505 0.49 +1.3
1,625,593 - AMB_RS07505 0.49 -2.8
1,625,593 - AMB_RS07505 0.49 +0.7
1,625,596 + AMB_RS07505 0.50 -0.2
1,625,597 - AMB_RS07505 0.50 -0.0
1,625,597 - AMB_RS07505 0.50 +0.8
1,625,716 - AMB_RS07505 0.60 -1.8
1,625,716 - AMB_RS07505 0.60 +0.2
1,625,771 + AMB_RS07505 0.64 +0.7
1,625,771 + AMB_RS07505 0.64 -1.8
1,625,771 + AMB_RS07505 0.64 -0.9
1,625,772 - AMB_RS07505 0.64 +1.1
1,625,772 - AMB_RS07505 0.64 -1.6
1,625,979 + AMB_RS07505 0.81 +0.9
1,625,980 - AMB_RS07505 0.82 +1.0
1,626,199 + +0.6
1,626,199 + -0.1
1,626,407 + AMB_RS07510 0.16 +0.4
1,626,407 + AMB_RS07510 0.16 +0.5
1,626,408 - AMB_RS07510 0.16 -2.3
1,626,408 - AMB_RS07510 0.16 -2.5
1,626,408 - AMB_RS07510 0.16 -0.6
1,626,408 - AMB_RS07510 0.16 -0.0
1,626,410 + AMB_RS07510 0.16 -1.4
1,626,410 + AMB_RS07510 0.16 +1.2
1,626,410 + AMB_RS07510 0.16 +0.4
1,626,410 + AMB_RS07510 0.16 -2.7
1,626,410 + AMB_RS07510 0.16 +0.2
1,626,410 + AMB_RS07510 0.16 +0.1
1,626,411 - AMB_RS07510 0.16 -0.3
1,626,411 - AMB_RS07510 0.16 -0.4
1,626,411 - AMB_RS07510 0.16 +0.1
1,626,545 + AMB_RS07510 0.27 -2.1
1,626,545 + AMB_RS07510 0.27 -1.6
1,626,545 + AMB_RS07510 0.27 -1.9
1,626,545 + AMB_RS07510 0.27 -1.8
1,626,545 + AMB_RS07510 0.27 -2.1
1,626,545 + AMB_RS07510 0.27 -0.6
1,626,546 - AMB_RS07510 0.27 -2.1
1,626,557 + AMB_RS07510 0.28 +0.3
1,626,593 + AMB_RS07510 0.31 -0.6
1,626,593 + AMB_RS07510 0.31 -0.8
1,626,594 - AMB_RS07510 0.31 +0.5
1,626,629 + AMB_RS07510 0.34 -1.2
1,626,630 - AMB_RS07510 0.34 -0.8
1,626,647 + AMB_RS07510 0.36 +0.2
1,626,648 - AMB_RS07510 0.36 -0.2
1,626,755 + AMB_RS07510 0.45 -2.2
1,626,755 + AMB_RS07510 0.45 -1.8
1,626,755 + AMB_RS07510 0.45 -2.1
1,626,755 + AMB_RS07510 0.45 -2.1
1,626,755 + AMB_RS07510 0.45 -0.6
1,626,755 + AMB_RS07510 0.45 -0.3
1,626,755 + AMB_RS07510 0.45 +0.6
1,626,755 + AMB_RS07510 0.45 -1.6
1,626,755 + AMB_RS07510 0.45 +0.2
1,626,755 + AMB_RS07510 0.45 -1.8
1,626,755 + AMB_RS07510 0.45 -2.3
1,626,756 - AMB_RS07510 0.45 -0.4
1,626,756 - AMB_RS07510 0.45 +0.9
1,626,756 - AMB_RS07510 0.45 -1.2
1,626,875 + AMB_RS07510 0.54 -0.6
1,626,876 - AMB_RS07510 0.55 -0.5
1,626,926 - AMB_RS07510 0.59 -0.8
1,626,935 + AMB_RS07510 0.59 -0.3
1,626,935 + AMB_RS07510 0.59 +0.0
1,626,936 - AMB_RS07510 0.60 -0.2
1,627,049 + AMB_RS07510 0.69 -3.1
1,627,050 - AMB_RS07510 0.69 -1.6
1,627,133 + AMB_RS07510 0.76 +1.1
1,627,313 + -0.1
1,627,314 - -0.8
1,627,314 - +0.4
1,627,314 - +0.3
1,627,314 - +0.3
1,627,314 - +0.8
1,627,422 - -0.9
1,627,422 - +0.2
1,627,422 - -0.2
1,627,522 + -0.2
1,627,523 - -0.3
1,627,523 - +0.3
1,627,612 + AMB_RS07515 0.10 +0.3
1,627,828 + AMB_RS07515 0.23 +0.6
1,628,047 - AMB_RS07515 0.36 -0.9
1,628,047 - AMB_RS07515 0.36 +0.9
1,628,047 - AMB_RS07515 0.36 -0.4
1,628,101 + AMB_RS07515 0.39 +0.3
1,628,182 + AMB_RS07515 0.44 -0.3
1,628,182 + AMB_RS07515 0.44 -1.4
1,628,182 + AMB_RS07515 0.44 -0.1
1,628,182 + AMB_RS07515 0.44 -1.9
1,628,182 + AMB_RS07515 0.44 -2.1
1,628,183 - AMB_RS07515 0.44 -0.2
1,628,183 - AMB_RS07515 0.44 -1.6
1,628,183 - AMB_RS07515 0.44 -0.1
1,628,266 + AMB_RS07515 0.49 -2.7
1,628,266 + AMB_RS07515 0.49 -0.9
1,628,266 + AMB_RS07515 0.49 +0.1
1,628,266 + AMB_RS07515 0.49 -2.3
1,628,267 - AMB_RS07515 0.49 -0.6
1,628,267 - AMB_RS07515 0.49 -1.4
1,628,267 - AMB_RS07515 0.49 -0.6
1,628,268 + AMB_RS07515 0.49 +0.4
1,628,268 + AMB_RS07515 0.49 -2.5
1,628,268 + AMB_RS07515 0.49 +0.0
1,628,269 - AMB_RS07515 0.49 -1.2
1,628,269 - AMB_RS07515 0.49 -0.2
1,628,269 - AMB_RS07515 0.49 +0.1
1,628,350 + AMB_RS07515 0.54 -0.5
1,628,350 + AMB_RS07515 0.54 +0.7
1,628,350 + AMB_RS07515 0.54 -1.9
1,628,351 - AMB_RS07515 0.54 -0.5
1,628,351 - AMB_RS07515 0.54 +0.2
1,628,351 - AMB_RS07515 0.54 -3.5
1,628,351 - AMB_RS07515 0.54 +0.1
1,628,393 - AMB_RS07515 0.56 +0.2

Or see this region's nucleotide sequence