Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS06755 and AMB_RS06760 are separated by 129 nucleotides AMB_RS06760 and AMB_RS06765 are separated by 157 nucleotides AMB_RS06765 and AMB_RS06770 are separated by 47 nucleotides
AMB_RS06755: AMB_RS06755 - hypothetical protein, at 1,449,079 to 1,449,558
_RS06755
AMB_RS06760: AMB_RS06760 - fumarate hydratase, at 1,449,688 to 1,451,304
_RS06760
AMB_RS06765: AMB_RS06765 - hypothetical protein, at 1,451,462 to 1,451,797
_RS06765
AMB_RS06770: AMB_RS06770 - DUF983 domain-containing protein, at 1,451,845 to 1,452,300
_RS06770
Position (kb) 1449
1450
1451
1452 Strain fitness (log2 ratio) -2
-1
0
1 at 1448.967 kb on + strand at 1448.967 kb on + strand at 1449.163 kb on + strand, within AMB_RS06755 at 1449.164 kb on - strand, within AMB_RS06755 at 1449.164 kb on - strand, within AMB_RS06755 at 1451.519 kb on + strand, within AMB_RS06765 at 1451.569 kb on + strand, within AMB_RS06765 at 1451.657 kb on + strand, within AMB_RS06765 at 1451.658 kb on - strand, within AMB_RS06765 at 1451.677 kb on + strand, within AMB_RS06765 at 1451.678 kb on - strand, within AMB_RS06765 at 1451.824 kb on + strand at 1452.001 kb on + strand, within AMB_RS06770 at 1452.002 kb on - strand, within AMB_RS06770 at 1452.076 kb on + strand, within AMB_RS06770 at 1452.077 kb on - strand, within AMB_RS06770 at 1452.077 kb on - strand, within AMB_RS06770
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 1,448,967 + -1.4 1,448,967 + +0.6 1,449,163 + AMB_RS06755 0.17 -0.4 1,449,164 - AMB_RS06755 0.18 +0.4 1,449,164 - AMB_RS06755 0.18 -0.9 1,451,519 + AMB_RS06765 0.17 -1.2 1,451,569 + AMB_RS06765 0.32 +0.4 1,451,657 + AMB_RS06765 0.58 -1.6 1,451,658 - AMB_RS06765 0.58 -0.5 1,451,677 + AMB_RS06765 0.64 +0.4 1,451,678 - AMB_RS06765 0.64 -0.2 1,451,824 + +0.0 1,452,001 + AMB_RS06770 0.34 -2.0 1,452,002 - AMB_RS06770 0.34 -1.7 1,452,076 + AMB_RS06770 0.51 -2.6 1,452,077 - AMB_RS06770 0.51 +0.3 1,452,077 - AMB_RS06770 0.51 -0.7
Or see this region's nucleotide sequence