Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06580

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06575 and AMB_RS06580 are separated by 5 nucleotidesAMB_RS06580 and AMB_RS06585 overlap by 16 nucleotides AMB_RS06575: AMB_RS06575 - ABC transporter, at 1,411,999 to 1,412,943 _RS06575 AMB_RS06580: AMB_RS06580 - DUF1007 domain-containing protein, at 1,412,949 to 1,413,674 _RS06580 AMB_RS06585: AMB_RS06585 - cystathionine beta-lyase, at 1,413,659 to 1,414,831 _RS06585 Position (kb) 1412 1413 1414Strain fitness (log2 ratio) -2 -1 0 1at 1412.950 kb on + strandat 1412.950 kb on + strandat 1413.002 kb on + strandat 1413.002 kb on + strandat 1413.003 kb on - strandat 1413.097 kb on + strand, within AMB_RS06580at 1413.097 kb on + strand, within AMB_RS06580at 1413.097 kb on + strand, within AMB_RS06580at 1413.097 kb on + strand, within AMB_RS06580at 1413.098 kb on - strand, within AMB_RS06580at 1413.098 kb on - strand, within AMB_RS06580at 1413.112 kb on + strand, within AMB_RS06580at 1413.112 kb on + strand, within AMB_RS06580at 1413.112 kb on + strand, within AMB_RS06580at 1413.112 kb on + strand, within AMB_RS06580at 1413.112 kb on + strand, within AMB_RS06580at 1413.113 kb on - strand, within AMB_RS06580at 1413.113 kb on - strand, within AMB_RS06580at 1413.113 kb on - strand, within AMB_RS06580at 1413.179 kb on - strand, within AMB_RS06580at 1413.259 kb on + strand, within AMB_RS06580at 1413.259 kb on + strand, within AMB_RS06580at 1413.260 kb on - strand, within AMB_RS06580at 1413.862 kb on - strand, within AMB_RS06585at 1413.988 kb on - strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.101 kb on + strand, within AMB_RS06585at 1414.102 kb on - strand, within AMB_RS06585at 1414.102 kb on - strand, within AMB_RS06585at 1414.102 kb on - strand, within AMB_RS06585at 1414.219 kb on + strand, within AMB_RS06585at 1414.220 kb on - strand, within AMB_RS06585at 1414.220 kb on - strand, within AMB_RS06585at 1414.220 kb on - strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.221 kb on + strand, within AMB_RS06585at 1414.222 kb on - strand, within AMB_RS06585at 1414.222 kb on - strand, within AMB_RS06585at 1414.222 kb on - strand, within AMB_RS06585at 1414.222 kb on - strand, within AMB_RS06585at 1414.247 kb on - strand, within AMB_RS06585at 1414.247 kb on - strand, within AMB_RS06585at 1414.247 kb on - strand, within AMB_RS06585at 1414.449 kb on + strand, within AMB_RS06585at 1414.449 kb on + strand, within AMB_RS06585at 1414.450 kb on - strand, within AMB_RS06585at 1414.450 kb on - strand, within AMB_RS06585at 1414.452 kb on + strand, within AMB_RS06585at 1414.452 kb on + strand, within AMB_RS06585at 1414.452 kb on + strand, within AMB_RS06585at 1414.452 kb on + strand, within AMB_RS06585at 1414.453 kb on - strand, within AMB_RS06585at 1414.453 kb on - strand, within AMB_RS06585at 1414.512 kb on + strand, within AMB_RS06585at 1414.513 kb on - strand, within AMB_RS06585at 1414.607 kb on - strand, within AMB_RS06585

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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1,412,950 + -1.6
1,412,950 + -1.4
1,413,002 + -1.1
1,413,002 + +0.9
1,413,003 - -0.2
1,413,097 + AMB_RS06580 0.20 -0.0
1,413,097 + AMB_RS06580 0.20 -0.6
1,413,097 + AMB_RS06580 0.20 +0.9
1,413,097 + AMB_RS06580 0.20 +0.4
1,413,098 - AMB_RS06580 0.21 +0.1
1,413,098 - AMB_RS06580 0.21 +1.4
1,413,112 + AMB_RS06580 0.22 +0.5
1,413,112 + AMB_RS06580 0.22 +0.2
1,413,112 + AMB_RS06580 0.22 +0.4
1,413,112 + AMB_RS06580 0.22 +1.4
1,413,112 + AMB_RS06580 0.22 -2.4
1,413,113 - AMB_RS06580 0.23 -1.2
1,413,113 - AMB_RS06580 0.23 +1.3
1,413,113 - AMB_RS06580 0.23 -2.0
1,413,179 - AMB_RS06580 0.32 +0.6
1,413,259 + AMB_RS06580 0.43 -1.9
1,413,259 + AMB_RS06580 0.43 +0.2
1,413,260 - AMB_RS06580 0.43 -1.2
1,413,862 - AMB_RS06585 0.17 -0.3
1,413,988 - AMB_RS06585 0.28 +0.7
1,414,101 + AMB_RS06585 0.38 -0.9
1,414,101 + AMB_RS06585 0.38 -0.9
1,414,101 + AMB_RS06585 0.38 -0.3
1,414,101 + AMB_RS06585 0.38 -1.1
1,414,101 + AMB_RS06585 0.38 +0.3
1,414,101 + AMB_RS06585 0.38 -1.1
1,414,101 + AMB_RS06585 0.38 -1.6
1,414,101 + AMB_RS06585 0.38 -0.7
1,414,101 + AMB_RS06585 0.38 +0.7
1,414,102 - AMB_RS06585 0.38 +0.9
1,414,102 - AMB_RS06585 0.38 -1.2
1,414,102 - AMB_RS06585 0.38 -1.3
1,414,219 + AMB_RS06585 0.48 +0.1
1,414,220 - AMB_RS06585 0.48 +0.8
1,414,220 - AMB_RS06585 0.48 +0.2
1,414,220 - AMB_RS06585 0.48 -1.6
1,414,221 + AMB_RS06585 0.48 +0.4
1,414,221 + AMB_RS06585 0.48 -1.2
1,414,221 + AMB_RS06585 0.48 -0.2
1,414,221 + AMB_RS06585 0.48 -1.9
1,414,221 + AMB_RS06585 0.48 -0.1
1,414,221 + AMB_RS06585 0.48 -1.6
1,414,221 + AMB_RS06585 0.48 +0.8
1,414,222 - AMB_RS06585 0.48 +0.4
1,414,222 - AMB_RS06585 0.48 +0.4
1,414,222 - AMB_RS06585 0.48 -0.7
1,414,222 - AMB_RS06585 0.48 -2.6
1,414,247 - AMB_RS06585 0.50 +0.1
1,414,247 - AMB_RS06585 0.50 +0.3
1,414,247 - AMB_RS06585 0.50 +0.7
1,414,449 + AMB_RS06585 0.67 -0.3
1,414,449 + AMB_RS06585 0.67 -1.9
1,414,450 - AMB_RS06585 0.67 -0.2
1,414,450 - AMB_RS06585 0.67 +0.2
1,414,452 + AMB_RS06585 0.68 -0.1
1,414,452 + AMB_RS06585 0.68 -0.1
1,414,452 + AMB_RS06585 0.68 +0.3
1,414,452 + AMB_RS06585 0.68 -1.4
1,414,453 - AMB_RS06585 0.68 +0.6
1,414,453 - AMB_RS06585 0.68 -1.4
1,414,512 + AMB_RS06585 0.73 -1.9
1,414,513 - AMB_RS06585 0.73 -0.9
1,414,607 - AMB_RS06585 0.81 -0.1

Or see this region's nucleotide sequence