Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06420

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06415 and AMB_RS06420 are separated by 60 nucleotidesAMB_RS06420 and AMB_RS06425 are separated by 29 nucleotides AMB_RS06415: AMB_RS06415 - PAS domain S-box protein, at 1,346,729 to 1,348,735 _RS06415 AMB_RS06420: AMB_RS06420 - dihydroorotase, at 1,348,796 to 1,350,127 _RS06420 AMB_RS06425: AMB_RS06425 - asparagine synthase (glutamine-hydrolyzing), at 1,350,157 to 1,351,914 _RS06425 Position (kb) 1348 1349 1350 1351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1348.011 kb on + strand, within AMB_RS06415at 1348.011 kb on + strand, within AMB_RS06415at 1348.011 kb on + strand, within AMB_RS06415at 1348.083 kb on + strand, within AMB_RS06415at 1348.083 kb on + strand, within AMB_RS06415at 1348.083 kb on + strand, within AMB_RS06415at 1348.083 kb on + strand, within AMB_RS06415at 1348.083 kb on + strand, within AMB_RS06415at 1348.084 kb on - strand, within AMB_RS06415at 1348.084 kb on - strand, within AMB_RS06415at 1348.084 kb on - strand, within AMB_RS06415at 1348.084 kb on - strand, within AMB_RS06415at 1348.084 kb on - strand, within AMB_RS06415at 1348.350 kb on + strand, within AMB_RS06415at 1348.351 kb on - strand, within AMB_RS06415at 1348.351 kb on - strand, within AMB_RS06415at 1348.369 kb on + strand, within AMB_RS06415at 1348.370 kb on - strand, within AMB_RS06415at 1348.390 kb on - strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.704 kb on + strandat 1348.704 kb on + strandat 1348.704 kb on + strandat 1348.704 kb on + strandat 1348.705 kb on - strandat 1348.705 kb on - strandat 1348.705 kb on - strandat 1348.705 kb on - strandat 1348.798 kb on - strandat 1348.798 kb on - strandat 1350.143 kb on - strandat 1350.143 kb on - strandat 1350.147 kb on + strandat 1350.147 kb on + strandat 1350.148 kb on - strandat 1350.158 kb on + strandat 1350.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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1,348,011 + AMB_RS06415 0.64 -0.1
1,348,011 + AMB_RS06415 0.64 -1.2
1,348,011 + AMB_RS06415 0.64 -4.0
1,348,083 + AMB_RS06415 0.67 -0.2
1,348,083 + AMB_RS06415 0.67 +0.4
1,348,083 + AMB_RS06415 0.67 -2.4
1,348,083 + AMB_RS06415 0.67 -1.6
1,348,083 + AMB_RS06415 0.67 +0.2
1,348,084 - AMB_RS06415 0.68 -0.2
1,348,084 - AMB_RS06415 0.68 +0.2
1,348,084 - AMB_RS06415 0.68 +0.1
1,348,084 - AMB_RS06415 0.68 +1.4
1,348,084 - AMB_RS06415 0.68 -3.6
1,348,350 + AMB_RS06415 0.81 -0.9
1,348,351 - AMB_RS06415 0.81 +0.2
1,348,351 - AMB_RS06415 0.81 +0.1
1,348,369 + AMB_RS06415 0.82 -0.9
1,348,370 - AMB_RS06415 0.82 -2.5
1,348,390 - AMB_RS06415 0.83 +0.6
1,348,440 + AMB_RS06415 0.85 -0.5
1,348,440 + AMB_RS06415 0.85 -0.6
1,348,440 + AMB_RS06415 0.85 -0.0
1,348,440 + AMB_RS06415 0.85 -2.4
1,348,440 + AMB_RS06415 0.85 -2.2
1,348,440 + AMB_RS06415 0.85 +0.2
1,348,440 + AMB_RS06415 0.85 +0.5
1,348,441 - AMB_RS06415 0.85 -0.2
1,348,441 - AMB_RS06415 0.85 -0.6
1,348,441 - AMB_RS06415 0.85 +0.9
1,348,441 - AMB_RS06415 0.85 -2.0
1,348,441 - AMB_RS06415 0.85 -3.5
1,348,441 - AMB_RS06415 0.85 +0.2
1,348,441 - AMB_RS06415 0.85 +0.5
1,348,441 - AMB_RS06415 0.85 +0.2
1,348,441 - AMB_RS06415 0.85 -3.0
1,348,441 - AMB_RS06415 0.85 +0.7
1,348,441 - AMB_RS06415 0.85 -0.1
1,348,704 + +0.1
1,348,704 + +0.1
1,348,704 + -2.5
1,348,704 + -0.9
1,348,705 - -0.5
1,348,705 - -2.2
1,348,705 - -2.3
1,348,705 - -0.3
1,348,798 - -1.2
1,348,798 - -0.6
1,350,143 - +0.8
1,350,143 - -0.3
1,350,147 + -1.7
1,350,147 + -2.9
1,350,148 - +0.4
1,350,158 + -0.2
1,350,166 - -1.7

Or see this region's nucleotide sequence