Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06000

Experiment: 30_an_mag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS05995 and AMB_RS06000 are separated by 10 nucleotidesAMB_RS06000 and AMB_RS24010 are separated by 3 nucleotidesAMB_RS24010 and AMB_RS06005 are separated by 38 nucleotidesAMB_RS06005 and AMB_RS06010 are separated by 6 nucleotides AMB_RS05995: AMB_RS05995 - hypothetical protein, at 1,255,633 to 1,256,607 _RS05995 AMB_RS06000: AMB_RS06000 - replication protein, at 1,256,618 to 1,259,608 _RS06000 AMB_RS24010: AMB_RS24010 - hypothetical protein, at 1,259,612 to 1,259,851 _RS24010 AMB_RS06005: AMB_RS06005 - hypothetical protein, at 1,259,890 to 1,260,387 _RS06005 AMB_RS06010: AMB_RS06010 - hypothetical protein, at 1,260,394 to 1,261,263 _RS06010 Position (kb) 1256 1257 1258 1259 1260Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1255.768 kb on + strand, within AMB_RS05995at 1255.768 kb on + strand, within AMB_RS05995at 1255.769 kb on - strand, within AMB_RS05995at 1255.769 kb on - strand, within AMB_RS05995at 1255.769 kb on - strand, within AMB_RS05995at 1255.780 kb on + strand, within AMB_RS05995at 1255.780 kb on + strand, within AMB_RS05995at 1255.781 kb on - strand, within AMB_RS05995at 1256.272 kb on + strand, within AMB_RS05995at 1256.272 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.368 kb on + strand, within AMB_RS05995at 1256.369 kb on - strand, within AMB_RS05995at 1256.369 kb on - strand, within AMB_RS05995at 1256.369 kb on - strand, within AMB_RS05995at 1256.548 kb on + strandat 1256.549 kb on - strandat 1256.955 kb on + strand, within AMB_RS06000at 1256.956 kb on - strand, within AMB_RS06000at 1256.956 kb on - strand, within AMB_RS06000at 1256.990 kb on + strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.991 kb on - strand, within AMB_RS06000at 1256.996 kb on + strand, within AMB_RS06000at 1256.996 kb on + strand, within AMB_RS06000at 1257.048 kb on - strand, within AMB_RS06000at 1257.088 kb on + strand, within AMB_RS06000at 1257.322 kb on + strand, within AMB_RS06000at 1257.451 kb on + strand, within AMB_RS06000at 1257.451 kb on + strand, within AMB_RS06000at 1257.803 kb on + strand, within AMB_RS06000at 1257.803 kb on + strand, within AMB_RS06000at 1257.908 kb on + strand, within AMB_RS06000at 1258.078 kb on - strand, within AMB_RS06000at 1258.211 kb on + strand, within AMB_RS06000at 1258.211 kb on + strand, within AMB_RS06000at 1258.212 kb on - strand, within AMB_RS06000at 1258.427 kb on + strand, within AMB_RS06000at 1258.658 kb on + strand, within AMB_RS06000at 1258.659 kb on - strand, within AMB_RS06000at 1258.704 kb on - strand, within AMB_RS06000at 1258.785 kb on - strand, within AMB_RS06000at 1258.785 kb on - strand, within AMB_RS06000at 1258.785 kb on - strand, within AMB_RS06000at 1258.785 kb on - strand, within AMB_RS06000at 1259.270 kb on + strand, within AMB_RS06000at 1259.600 kb on + strandat 1259.606 kb on + strandat 1259.682 kb on + strand, within AMB_RS24010at 1259.683 kb on - strand, within AMB_RS24010at 1259.748 kb on + strand, within AMB_RS24010at 1259.748 kb on + strand, within AMB_RS24010at 1259.748 kb on + strand, within AMB_RS24010at 1259.862 kb on + strandat 1259.862 kb on + strandat 1259.862 kb on + strandat 1259.863 kb on - strandat 1259.936 kb on - strandat 1259.936 kb on - strandat 1260.200 kb on - strand, within AMB_RS06005at 1260.200 kb on - strand, within AMB_RS06005at 1260.200 kb on - strand, within AMB_RS06005at 1260.200 kb on - strand, within AMB_RS06005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
remove
1,255,768 + AMB_RS05995 0.14 -1.6
1,255,768 + AMB_RS05995 0.14 -0.6
1,255,769 - AMB_RS05995 0.14 +0.1
1,255,769 - AMB_RS05995 0.14 +1.1
1,255,769 - AMB_RS05995 0.14 +0.1
1,255,780 + AMB_RS05995 0.15 +0.3
1,255,780 + AMB_RS05995 0.15 -0.8
1,255,781 - AMB_RS05995 0.15 -1.2
1,256,272 + AMB_RS05995 0.66 -0.9
1,256,272 + AMB_RS05995 0.66 +0.6
1,256,368 + AMB_RS05995 0.75 -0.6
1,256,368 + AMB_RS05995 0.75 -0.2
1,256,368 + AMB_RS05995 0.75 -0.0
1,256,368 + AMB_RS05995 0.75 -0.9
1,256,368 + AMB_RS05995 0.75 -0.9
1,256,368 + AMB_RS05995 0.75 -0.0
1,256,368 + AMB_RS05995 0.75 -2.0
1,256,368 + AMB_RS05995 0.75 +0.5
1,256,369 - AMB_RS05995 0.75 -0.9
1,256,369 - AMB_RS05995 0.75 -0.1
1,256,369 - AMB_RS05995 0.75 -1.8
1,256,548 + -1.3
1,256,549 - -0.2
1,256,955 + AMB_RS06000 0.11 -2.8
1,256,956 - AMB_RS06000 0.11 +0.1
1,256,956 - AMB_RS06000 0.11 +0.5
1,256,990 + AMB_RS06000 0.12 +0.7
1,256,991 - AMB_RS06000 0.12 +0.4
1,256,991 - AMB_RS06000 0.12 -2.2
1,256,991 - AMB_RS06000 0.12 +0.4
1,256,991 - AMB_RS06000 0.12 -0.9
1,256,991 - AMB_RS06000 0.12 +0.2
1,256,991 - AMB_RS06000 0.12 -0.4
1,256,991 - AMB_RS06000 0.12 -0.9
1,256,991 - AMB_RS06000 0.12 -2.0
1,256,991 - AMB_RS06000 0.12 -0.7
1,256,991 - AMB_RS06000 0.12 +0.1
1,256,996 + AMB_RS06000 0.13 -0.2
1,256,996 + AMB_RS06000 0.13 -0.1
1,257,048 - AMB_RS06000 0.14 -0.2
1,257,088 + AMB_RS06000 0.16 -4.0
1,257,322 + AMB_RS06000 0.24 +0.4
1,257,451 + AMB_RS06000 0.28 +1.5
1,257,451 + AMB_RS06000 0.28 +0.4
1,257,803 + AMB_RS06000 0.40 -0.5
1,257,803 + AMB_RS06000 0.40 +0.0
1,257,908 + AMB_RS06000 0.43 +0.4
1,258,078 - AMB_RS06000 0.49 +0.3
1,258,211 + AMB_RS06000 0.53 -0.6
1,258,211 + AMB_RS06000 0.53 -0.1
1,258,212 - AMB_RS06000 0.53 -1.2
1,258,427 + AMB_RS06000 0.60 -2.6
1,258,658 + AMB_RS06000 0.68 -0.1
1,258,659 - AMB_RS06000 0.68 -1.4
1,258,704 - AMB_RS06000 0.70 -1.4
1,258,785 - AMB_RS06000 0.72 -1.4
1,258,785 - AMB_RS06000 0.72 +1.2
1,258,785 - AMB_RS06000 0.72 -0.2
1,258,785 - AMB_RS06000 0.72 +0.3
1,259,270 + AMB_RS06000 0.89 -0.9
1,259,600 + -1.2
1,259,606 + -0.6
1,259,682 + AMB_RS24010 0.29 -1.0
1,259,683 - AMB_RS24010 0.30 -0.1
1,259,748 + AMB_RS24010 0.57 -0.0
1,259,748 + AMB_RS24010 0.57 -0.2
1,259,748 + AMB_RS24010 0.57 -0.9
1,259,862 + -1.6
1,259,862 + +0.3
1,259,862 + -3.8
1,259,863 - +0.4
1,259,936 - -0.2
1,259,936 - -2.3
1,260,200 - AMB_RS06005 0.62 -2.6
1,260,200 - AMB_RS06005 0.62 -2.2
1,260,200 - AMB_RS06005 0.62 -1.7
1,260,200 - AMB_RS06005 0.62 -0.0

Or see this region's nucleotide sequence