Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05405

Experiment: 30_an_mag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS05400 and AMB_RS05405 are separated by 5 nucleotidesAMB_RS05405 and AMB_RS05410 are separated by 7 nucleotidesAMB_RS05410 and AMB_RS05415 are separated by 13 nucleotides AMB_RS05400: AMB_RS05400 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 1,118,543 to 1,120,267 _RS05400 AMB_RS05405: AMB_RS05405 - 4Fe-4S dicluster domain-containing protein, at 1,120,273 to 1,120,494 _RS05405 AMB_RS05410: AMB_RS05410 - HEAT repeat-containing protein, at 1,120,502 to 1,121,437 _RS05410 AMB_RS05415: AMB_RS05415 - 4Fe-4S binding protein, at 1,121,451 to 1,122,563 _RS05415 Position (kb) 1120 1121Strain fitness (log2 ratio) -3 -2 -1 0 1at 1119.281 kb on + strand, within AMB_RS05400at 1119.281 kb on + strand, within AMB_RS05400at 1119.282 kb on - strand, within AMB_RS05400at 1119.282 kb on - strand, within AMB_RS05400at 1119.283 kb on + strand, within AMB_RS05400at 1119.302 kb on + strand, within AMB_RS05400at 1119.302 kb on + strand, within AMB_RS05400at 1119.302 kb on + strand, within AMB_RS05400at 1119.302 kb on + strand, within AMB_RS05400at 1119.302 kb on + strand, within AMB_RS05400at 1119.303 kb on - strand, within AMB_RS05400at 1119.493 kb on + strand, within AMB_RS05400at 1119.493 kb on + strand, within AMB_RS05400at 1119.653 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.689 kb on + strand, within AMB_RS05400at 1119.690 kb on - strand, within AMB_RS05400at 1119.690 kb on - strand, within AMB_RS05400at 1119.690 kb on - strand, within AMB_RS05400at 1119.744 kb on - strand, within AMB_RS05400at 1119.857 kb on + strand, within AMB_RS05400at 1119.857 kb on + strand, within AMB_RS05400at 1119.857 kb on + strand, within AMB_RS05400at 1119.857 kb on + strand, within AMB_RS05400at 1119.858 kb on - strand, within AMB_RS05400at 1119.858 kb on - strand, within AMB_RS05400at 1120.010 kb on + strand, within AMB_RS05400at 1120.010 kb on + strand, within AMB_RS05400at 1120.010 kb on + strand, within AMB_RS05400at 1120.010 kb on + strand, within AMB_RS05400at 1120.010 kb on + strand, within AMB_RS05400at 1120.011 kb on - strand, within AMB_RS05400at 1120.011 kb on - strand, within AMB_RS05400at 1120.011 kb on - strand, within AMB_RS05400at 1120.011 kb on - strand, within AMB_RS05400at 1120.011 kb on - strand, within AMB_RS05400at 1120.082 kb on + strand, within AMB_RS05400at 1120.196 kb on + strandat 1120.197 kb on - strandat 1120.197 kb on - strandat 1120.197 kb on - strandat 1120.197 kb on - strandat 1120.232 kb on + strandat 1120.232 kb on + strandat 1120.232 kb on + strandat 1120.233 kb on - strandat 1120.233 kb on - strandat 1120.233 kb on - strandat 1120.233 kb on - strandat 1120.252 kb on + strandat 1120.408 kb on + strand, within AMB_RS05405at 1120.409 kb on - strand, within AMB_RS05405at 1120.480 kb on + strandat 1121.202 kb on - strand, within AMB_RS05410at 1121.245 kb on + strand, within AMB_RS05410at 1121.492 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
remove
1,119,281 + AMB_RS05400 0.43 -0.9
1,119,281 + AMB_RS05400 0.43 +0.1
1,119,282 - AMB_RS05400 0.43 -0.2
1,119,282 - AMB_RS05400 0.43 -0.6
1,119,283 + AMB_RS05400 0.43 -0.9
1,119,302 + AMB_RS05400 0.44 -2.0
1,119,302 + AMB_RS05400 0.44 -0.2
1,119,302 + AMB_RS05400 0.44 -0.3
1,119,302 + AMB_RS05400 0.44 -0.6
1,119,302 + AMB_RS05400 0.44 +0.3
1,119,303 - AMB_RS05400 0.44 -1.2
1,119,493 + AMB_RS05400 0.55 +0.1
1,119,493 + AMB_RS05400 0.55 -1.2
1,119,653 + AMB_RS05400 0.64 -0.9
1,119,689 + AMB_RS05400 0.66 -1.2
1,119,689 + AMB_RS05400 0.66 +0.0
1,119,689 + AMB_RS05400 0.66 +0.5
1,119,689 + AMB_RS05400 0.66 +0.7
1,119,689 + AMB_RS05400 0.66 -0.2
1,119,689 + AMB_RS05400 0.66 -2.9
1,119,689 + AMB_RS05400 0.66 -1.6
1,119,689 + AMB_RS05400 0.66 -0.6
1,119,690 - AMB_RS05400 0.66 -0.5
1,119,690 - AMB_RS05400 0.66 -2.3
1,119,690 - AMB_RS05400 0.66 -1.6
1,119,744 - AMB_RS05400 0.70 -1.6
1,119,857 + AMB_RS05400 0.76 +0.0
1,119,857 + AMB_RS05400 0.76 +0.4
1,119,857 + AMB_RS05400 0.76 -0.5
1,119,857 + AMB_RS05400 0.76 +0.4
1,119,858 - AMB_RS05400 0.76 -0.2
1,119,858 - AMB_RS05400 0.76 +0.2
1,120,010 + AMB_RS05400 0.85 -2.6
1,120,010 + AMB_RS05400 0.85 -2.4
1,120,010 + AMB_RS05400 0.85 -0.1
1,120,010 + AMB_RS05400 0.85 -0.6
1,120,010 + AMB_RS05400 0.85 +0.0
1,120,011 - AMB_RS05400 0.85 +0.1
1,120,011 - AMB_RS05400 0.85 +0.6
1,120,011 - AMB_RS05400 0.85 -0.2
1,120,011 - AMB_RS05400 0.85 +0.3
1,120,011 - AMB_RS05400 0.85 -0.6
1,120,082 + AMB_RS05400 0.89 -0.1
1,120,196 + +0.3
1,120,197 - +0.0
1,120,197 - -1.4
1,120,197 - +0.1
1,120,197 - -1.9
1,120,232 + -1.9
1,120,232 + -0.5
1,120,232 + +1.0
1,120,233 - -2.2
1,120,233 - +0.4
1,120,233 - -0.9
1,120,233 - -1.2
1,120,252 + -1.2
1,120,408 + AMB_RS05405 0.61 -2.4
1,120,409 - AMB_RS05405 0.61 +0.2
1,120,480 + -0.4
1,121,202 - AMB_RS05410 0.75 -0.2
1,121,245 + AMB_RS05410 0.79 +0.1
1,121,492 + -1.4

Or see this region's nucleotide sequence