Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04770

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23925 and AMB_RS04760 are separated by 70 nucleotidesAMB_RS04760 and AMB_RS04765 overlap by 11 nucleotidesAMB_RS04765 and AMB_RS04770 overlap by 55 nucleotidesAMB_RS04770 and AMB_RS04775 are separated by 121 nucleotides AMB_RS23925: AMB_RS23925 - hypothetical protein, at 992,672 to 992,974 _RS23925 AMB_RS04760: AMB_RS04760 - HU family DNA-binding protein, at 993,045 to 993,323 _RS04760 AMB_RS04765: AMB_RS04765 - transcriptional regulator, at 993,313 to 993,726 _RS04765 AMB_RS04770: AMB_RS04770 - IS3 family transposase, at 993,672 to 994,339 _RS04770 AMB_RS04775: AMB_RS04775 - integrase, at 994,461 to 995,318 _RS04775 Position (kb) 993 994 995Strain fitness (log2 ratio) -2 -1 0 1 2at 992.725 kb on - strand, within AMB_RS23925at 992.844 kb on + strand, within AMB_RS23925at 992.953 kb on + strandat 992.953 kb on + strandat 992.953 kb on + strandat 992.953 kb on + strandat 992.972 kb on + strandat 992.973 kb on - strandat 992.973 kb on - strandat 992.996 kb on + strandat 992.996 kb on + strandat 992.996 kb on + strandat 992.997 kb on - strandat 992.997 kb on - strandat 992.997 kb on - strandat 992.997 kb on - strandat 993.017 kb on + strandat 993.622 kb on + strand, within AMB_RS04765at 993.687 kb on + strandat 993.706 kb on - strandat 993.847 kb on + strand, within AMB_RS04770at 993.848 kb on - strand, within AMB_RS04770at 993.952 kb on + strand, within AMB_RS04770at 993.952 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.996 kb on + strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 993.997 kb on - strand, within AMB_RS04770at 994.114 kb on - strand, within AMB_RS04770at 994.226 kb on + strand, within AMB_RS04770at 994.337 kb on + strandat 994.338 kb on - strandat 994.338 kb on - strandat 994.490 kb on + strandat 994.491 kb on - strandat 994.491 kb on - strandat 994.491 kb on - strandat 994.542 kb on + strandat 994.542 kb on + strandat 994.543 kb on - strandat 994.543 kb on - strandat 994.543 kb on - strandat 994.647 kb on - strand, within AMB_RS04775at 994.647 kb on - strand, within AMB_RS04775at 994.695 kb on + strand, within AMB_RS04775at 994.695 kb on + strand, within AMB_RS04775at 994.695 kb on + strand, within AMB_RS04775at 994.696 kb on - strand, within AMB_RS04775at 994.740 kb on + strand, within AMB_RS04775at 994.740 kb on + strand, within AMB_RS04775at 994.768 kb on + strand, within AMB_RS04775at 994.769 kb on - strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.848 kb on + strand, within AMB_RS04775at 994.849 kb on - strand, within AMB_RS04775at 994.849 kb on - strand, within AMB_RS04775at 994.957 kb on - strand, within AMB_RS04775at 994.957 kb on - strand, within AMB_RS04775at 994.998 kb on + strand, within AMB_RS04775at 994.998 kb on + strand, within AMB_RS04775at 994.998 kb on + strand, within AMB_RS04775at 994.999 kb on - strand, within AMB_RS04775at 994.999 kb on - strand, within AMB_RS04775at 994.999 kb on - strand, within AMB_RS04775at 995.072 kb on + strand, within AMB_RS04775at 995.073 kb on - strand, within AMB_RS04775at 995.144 kb on + strand, within AMB_RS04775at 995.145 kb on - strand, within AMB_RS04775at 995.219 kb on - strand, within AMB_RS04775at 995.219 kb on - strand, within AMB_RS04775at 995.235 kb on + strandat 995.236 kb on - strandat 995.245 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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992,725 - AMB_RS23925 0.17 -0.6
992,844 + AMB_RS23925 0.57 -0.9
992,953 + -0.2
992,953 + -0.9
992,953 + +0.8
992,953 + -0.1
992,972 + -2.1
992,973 - -0.6
992,973 - -0.0
992,996 + +0.1
992,996 + +0.4
992,996 + -0.9
992,997 - -1.1
992,997 - -0.9
992,997 - -0.9
992,997 - +0.1
993,017 + -0.5
993,622 + AMB_RS04765 0.75 -0.1
993,687 + -1.6
993,706 - -2.3
993,847 + AMB_RS04770 0.26 -1.4
993,848 - AMB_RS04770 0.26 +0.0
993,952 + AMB_RS04770 0.42 -0.1
993,952 + AMB_RS04770 0.42 +1.0
993,996 + AMB_RS04770 0.49 +0.4
993,996 + AMB_RS04770 0.49 -0.5
993,996 + AMB_RS04770 0.49 +1.0
993,996 + AMB_RS04770 0.49 -1.1
993,996 + AMB_RS04770 0.49 -2.7
993,996 + AMB_RS04770 0.49 -0.5
993,997 - AMB_RS04770 0.49 +1.7
993,997 - AMB_RS04770 0.49 +0.5
993,997 - AMB_RS04770 0.49 -0.1
993,997 - AMB_RS04770 0.49 +0.0
993,997 - AMB_RS04770 0.49 -0.2
993,997 - AMB_RS04770 0.49 +0.4
993,997 - AMB_RS04770 0.49 -0.9
993,997 - AMB_RS04770 0.49 +0.3
994,114 - AMB_RS04770 0.66 +0.2
994,226 + AMB_RS04770 0.83 +1.4
994,337 + -2.4
994,338 - -1.1
994,338 - -0.2
994,490 + +0.3
994,491 - +0.0
994,491 - -2.0
994,491 - +0.2
994,542 + -1.2
994,542 + -0.2
994,543 - +1.1
994,543 - +0.3
994,543 - -0.1
994,647 - AMB_RS04775 0.22 +0.2
994,647 - AMB_RS04775 0.22 -0.2
994,695 + AMB_RS04775 0.27 +0.1
994,695 + AMB_RS04775 0.27 -2.0
994,695 + AMB_RS04775 0.27 +0.3
994,696 - AMB_RS04775 0.27 -2.1
994,740 + AMB_RS04775 0.33 +0.0
994,740 + AMB_RS04775 0.33 -0.3
994,768 + AMB_RS04775 0.36 -0.4
994,769 - AMB_RS04775 0.36 -0.1
994,848 + AMB_RS04775 0.45 -1.9
994,848 + AMB_RS04775 0.45 -0.6
994,848 + AMB_RS04775 0.45 +0.7
994,848 + AMB_RS04775 0.45 -1.4
994,848 + AMB_RS04775 0.45 +2.0
994,848 + AMB_RS04775 0.45 -1.9
994,849 - AMB_RS04775 0.45 -0.4
994,849 - AMB_RS04775 0.45 -0.9
994,957 - AMB_RS04775 0.58 -0.6
994,957 - AMB_RS04775 0.58 -2.5
994,998 + AMB_RS04775 0.63 -0.0
994,998 + AMB_RS04775 0.63 +0.3
994,998 + AMB_RS04775 0.63 -2.6
994,999 - AMB_RS04775 0.63 -1.9
994,999 - AMB_RS04775 0.63 +1.4
994,999 - AMB_RS04775 0.63 -0.0
995,072 + AMB_RS04775 0.71 -0.2
995,073 - AMB_RS04775 0.71 +0.6
995,144 + AMB_RS04775 0.80 +0.2
995,145 - AMB_RS04775 0.80 -0.1
995,219 - AMB_RS04775 0.88 +0.6
995,219 - AMB_RS04775 0.88 -0.1
995,235 + +1.4
995,236 - -0.6
995,245 + -0.1

Or see this region's nucleotide sequence