Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04430

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04420 and AMB_RS04425 are separated by 83 nucleotidesAMB_RS04425 and AMB_RS04430 are separated by 26 nucleotidesAMB_RS04430 and AMB_RS04435 are separated by 234 nucleotides AMB_RS04420: AMB_RS04420 - hypothetical protein, at 928,361 to 928,975 _RS04420 AMB_RS04425: AMB_RS04425 - low molecular weight phosphotyrosine protein phosphatase, at 929,059 to 929,532 _RS04425 AMB_RS04430: AMB_RS04430 - hypothetical protein, at 929,559 to 930,002 _RS04430 AMB_RS04435: AMB_RS04435 - hypothetical protein, at 930,237 to 931,745 _RS04435 Position (kb) 929 930 931Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 928.625 kb on + strand, within AMB_RS04420at 928.625 kb on + strand, within AMB_RS04420at 928.625 kb on + strand, within AMB_RS04420at 928.625 kb on + strand, within AMB_RS04420at 928.625 kb on + strand, within AMB_RS04420at 928.625 kb on + strand, within AMB_RS04420at 928.626 kb on - strand, within AMB_RS04420at 928.733 kb on + strand, within AMB_RS04420at 928.733 kb on + strand, within AMB_RS04420at 928.733 kb on + strand, within AMB_RS04420at 928.733 kb on + strand, within AMB_RS04420at 928.733 kb on + strand, within AMB_RS04420at 928.733 kb on + strand, within AMB_RS04420at 928.733 kb on + strand, within AMB_RS04420at 928.734 kb on - strand, within AMB_RS04420at 928.734 kb on - strand, within AMB_RS04420at 928.734 kb on - strand, within AMB_RS04420at 928.734 kb on - strand, within AMB_RS04420at 928.734 kb on - strand, within AMB_RS04420at 928.764 kb on - strand, within AMB_RS04420at 929.091 kb on + strandat 929.091 kb on + strandat 929.091 kb on + strandat 929.091 kb on + strandat 929.091 kb on + strandat 929.092 kb on - strandat 929.092 kb on - strandat 929.092 kb on - strandat 929.092 kb on - strandat 929.092 kb on - strandat 929.191 kb on + strand, within AMB_RS04425at 929.192 kb on - strand, within AMB_RS04425at 929.192 kb on - strand, within AMB_RS04425at 929.192 kb on - strand, within AMB_RS04425at 929.192 kb on - strand, within AMB_RS04425at 929.249 kb on - strand, within AMB_RS04425at 929.249 kb on - strand, within AMB_RS04425at 929.438 kb on - strand, within AMB_RS04425at 929.438 kb on - strand, within AMB_RS04425at 929.531 kb on - strandat 929.538 kb on + strandat 929.538 kb on + strandat 929.548 kb on - strandat 929.584 kb on + strandat 929.584 kb on + strandat 929.584 kb on + strandat 929.585 kb on - strandat 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.881 kb on + strand, within AMB_RS04430at 929.881 kb on + strand, within AMB_RS04430at 929.881 kb on + strand, within AMB_RS04430at 929.882 kb on - strand, within AMB_RS04430at 929.894 kb on - strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 930.006 kb on + strandat 930.007 kb on - strandat 930.007 kb on - strandat 930.117 kb on + strandat 930.137 kb on + strandat 930.138 kb on - strandat 930.138 kb on - strandat 930.320 kb on + strandat 930.321 kb on - strandat 930.507 kb on + strand, within AMB_RS04435at 930.508 kb on - strand, within AMB_RS04435at 930.508 kb on - strand, within AMB_RS04435at 930.568 kb on - strand, within AMB_RS04435at 930.643 kb on + strand, within AMB_RS04435at 930.644 kb on - strand, within AMB_RS04435at 930.644 kb on - strand, within AMB_RS04435at 930.777 kb on + strand, within AMB_RS04435at 930.778 kb on - strand, within AMB_RS04435at 930.778 kb on - strand, within AMB_RS04435at 930.822 kb on + strand, within AMB_RS04435at 930.822 kb on + strand, within AMB_RS04435at 930.822 kb on + strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.824 kb on + strand, within AMB_RS04435at 930.825 kb on - strand, within AMB_RS04435at 930.825 kb on - strand, within AMB_RS04435

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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928,625 + AMB_RS04420 0.43 -4.1
928,625 + AMB_RS04420 0.43 -0.1
928,625 + AMB_RS04420 0.43 -0.2
928,625 + AMB_RS04420 0.43 -0.3
928,625 + AMB_RS04420 0.43 -1.7
928,625 + AMB_RS04420 0.43 -0.1
928,626 - AMB_RS04420 0.43 +0.9
928,733 + AMB_RS04420 0.60 +0.6
928,733 + AMB_RS04420 0.60 +0.4
928,733 + AMB_RS04420 0.60 -0.1
928,733 + AMB_RS04420 0.60 -1.0
928,733 + AMB_RS04420 0.60 -0.1
928,733 + AMB_RS04420 0.60 -0.2
928,733 + AMB_RS04420 0.60 +0.4
928,734 - AMB_RS04420 0.61 -0.5
928,734 - AMB_RS04420 0.61 -1.4
928,734 - AMB_RS04420 0.61 +1.4
928,734 - AMB_RS04420 0.61 +0.2
928,734 - AMB_RS04420 0.61 -2.4
928,764 - AMB_RS04420 0.66 +0.4
929,091 + -0.3
929,091 + -0.3
929,091 + +0.1
929,091 + -1.6
929,091 + +0.4
929,092 - +0.2
929,092 - -0.6
929,092 - -1.6
929,092 - -0.4
929,092 - +0.9
929,191 + AMB_RS04425 0.28 -0.9
929,192 - AMB_RS04425 0.28 -1.7
929,192 - AMB_RS04425 0.28 -1.7
929,192 - AMB_RS04425 0.28 -2.1
929,192 - AMB_RS04425 0.28 +0.2
929,249 - AMB_RS04425 0.40 -0.2
929,249 - AMB_RS04425 0.40 -0.1
929,438 - AMB_RS04425 0.80 +1.0
929,438 - AMB_RS04425 0.80 -0.0
929,531 - +0.3
929,538 + -1.3
929,538 + -1.9
929,548 - -0.9
929,584 + -0.1
929,584 + -0.3
929,584 + -0.2
929,585 - -1.3
929,725 + AMB_RS04430 0.37 +0.1
929,725 + AMB_RS04430 0.37 -1.4
929,725 + AMB_RS04430 0.37 -0.1
929,725 + AMB_RS04430 0.37 +0.0
929,725 + AMB_RS04430 0.37 -0.9
929,725 + AMB_RS04430 0.37 -0.1
929,725 + AMB_RS04430 0.37 -0.6
929,725 + AMB_RS04430 0.37 -1.1
929,725 + AMB_RS04430 0.37 -1.7
929,725 + AMB_RS04430 0.37 -1.9
929,725 + AMB_RS04430 0.37 -0.1
929,726 - AMB_RS04430 0.38 -0.1
929,726 - AMB_RS04430 0.38 -0.7
929,726 - AMB_RS04430 0.38 +0.2
929,726 - AMB_RS04430 0.38 +0.2
929,726 - AMB_RS04430 0.38 -0.2
929,726 - AMB_RS04430 0.38 -1.3
929,726 - AMB_RS04430 0.38 -2.1
929,726 - AMB_RS04430 0.38 -0.8
929,726 - AMB_RS04430 0.38 +1.4
929,726 - AMB_RS04430 0.38 +0.4
929,726 - AMB_RS04430 0.38 -1.4
929,726 - AMB_RS04430 0.38 -0.0
929,881 + AMB_RS04430 0.73 +0.1
929,881 + AMB_RS04430 0.73 -0.1
929,881 + AMB_RS04430 0.73 +0.2
929,882 - AMB_RS04430 0.73 -2.7
929,894 - AMB_RS04430 0.75 +0.4
929,956 + AMB_RS04430 0.89 -0.1
929,956 + AMB_RS04430 0.89 +0.2
929,956 + AMB_RS04430 0.89 -1.4
929,956 + AMB_RS04430 0.89 -0.6
929,956 + AMB_RS04430 0.89 +0.2
929,956 + AMB_RS04430 0.89 +1.0
929,957 - AMB_RS04430 0.90 -0.0
929,957 - AMB_RS04430 0.90 -0.3
929,957 - AMB_RS04430 0.90 -0.6
929,957 - AMB_RS04430 0.90 -1.6
929,957 - AMB_RS04430 0.90 +0.0
929,957 - AMB_RS04430 0.90 -2.7
929,957 - AMB_RS04430 0.90 -2.3
929,957 - AMB_RS04430 0.90 +0.4
929,957 - AMB_RS04430 0.90 +0.3
929,957 - AMB_RS04430 0.90 -1.7
929,957 - AMB_RS04430 0.90 -1.1
929,957 - AMB_RS04430 0.90 -1.2
929,957 - AMB_RS04430 0.90 +0.1
930,006 + +2.4
930,007 - -1.6
930,007 - -0.3
930,117 + -0.2
930,137 + -0.4
930,138 - -0.6
930,138 - -3.2
930,320 + +0.1
930,321 - +0.4
930,507 + AMB_RS04435 0.18 +0.2
930,508 - AMB_RS04435 0.18 +1.4
930,508 - AMB_RS04435 0.18 -0.1
930,568 - AMB_RS04435 0.22 +0.0
930,643 + AMB_RS04435 0.27 -1.1
930,644 - AMB_RS04435 0.27 +0.4
930,644 - AMB_RS04435 0.27 -0.5
930,777 + AMB_RS04435 0.36 -0.9
930,778 - AMB_RS04435 0.36 -1.6
930,778 - AMB_RS04435 0.36 +0.0
930,822 + AMB_RS04435 0.39 -0.9
930,822 + AMB_RS04435 0.39 +0.4
930,822 + AMB_RS04435 0.39 -2.7
930,823 - AMB_RS04435 0.39 -0.8
930,823 - AMB_RS04435 0.39 -1.1
930,823 - AMB_RS04435 0.39 -0.6
930,823 - AMB_RS04435 0.39 -1.7
930,823 - AMB_RS04435 0.39 +0.2
930,823 - AMB_RS04435 0.39 -1.1
930,823 - AMB_RS04435 0.39 -1.4
930,823 - AMB_RS04435 0.39 -0.5
930,823 - AMB_RS04435 0.39 -2.4
930,823 - AMB_RS04435 0.39 +0.3
930,823 - AMB_RS04435 0.39 -1.4
930,824 + AMB_RS04435 0.39 -2.6
930,825 - AMB_RS04435 0.39 -0.4
930,825 - AMB_RS04435 0.39 -1.4

Or see this region's nucleotide sequence