Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04410 and AMB_RS04415 are separated by 65 nucleotides AMB_RS04415 and AMB_RS04420 are separated by 215 nucleotides AMB_RS04420 and AMB_RS04425 are separated by 83 nucleotides
AMB_RS04410: AMB_RS04410 - potassium transporter Kup, at 925,468 to 927,357
_RS04410
AMB_RS04415: AMB_RS04415 - NAD-dependent protein deacylase, at 927,423 to 928,145
_RS04415
AMB_RS04420: AMB_RS04420 - hypothetical protein, at 928,361 to 928,975
_RS04420
AMB_RS04425: AMB_RS04425 - low molecular weight phosphotyrosine protein phosphatase, at 929,059 to 929,532
_RS04425
Position (kb) 927
928
929 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 927.400 kb on - strand at 927.400 kb on - strand at 927.459 kb on + strand at 927.459 kb on + strand at 927.459 kb on + strand at 927.524 kb on + strand, within AMB_RS04415 at 927.843 kb on + strand, within AMB_RS04415 at 927.843 kb on + strand, within AMB_RS04415 at 927.844 kb on - strand, within AMB_RS04415 at 927.844 kb on - strand, within AMB_RS04415 at 927.844 kb on - strand, within AMB_RS04415 at 927.970 kb on + strand, within AMB_RS04415 at 927.970 kb on + strand, within AMB_RS04415 at 927.970 kb on + strand, within AMB_RS04415 at 927.970 kb on + strand, within AMB_RS04415 at 927.970 kb on + strand, within AMB_RS04415 at 927.971 kb on - strand, within AMB_RS04415 at 928.264 kb on + strand at 928.625 kb on + strand, within AMB_RS04420 at 928.625 kb on + strand, within AMB_RS04420 at 928.625 kb on + strand, within AMB_RS04420 at 928.625 kb on + strand, within AMB_RS04420 at 928.625 kb on + strand, within AMB_RS04420 at 928.625 kb on + strand, within AMB_RS04420 at 928.626 kb on - strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.734 kb on - strand, within AMB_RS04420 at 928.734 kb on - strand, within AMB_RS04420 at 928.734 kb on - strand, within AMB_RS04420 at 928.734 kb on - strand, within AMB_RS04420 at 928.734 kb on - strand, within AMB_RS04420 at 928.764 kb on - strand, within AMB_RS04420 at 929.091 kb on + strand at 929.091 kb on + strand at 929.091 kb on + strand at 929.091 kb on + strand at 929.091 kb on + strand at 929.092 kb on - strand at 929.092 kb on - strand at 929.092 kb on - strand at 929.092 kb on - strand at 929.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 927,400 - +0.2 927,400 - -0.9 927,459 + +0.1 927,459 + -0.9 927,459 + -2.3 927,524 + AMB_RS04415 0.14 -1.6 927,843 + AMB_RS04415 0.58 +0.3 927,843 + AMB_RS04415 0.58 -1.7 927,844 - AMB_RS04415 0.58 +0.1 927,844 - AMB_RS04415 0.58 -0.1 927,844 - AMB_RS04415 0.58 -0.0 927,970 + AMB_RS04415 0.76 -0.6 927,970 + AMB_RS04415 0.76 +0.4 927,970 + AMB_RS04415 0.76 -0.0 927,970 + AMB_RS04415 0.76 -0.6 927,970 + AMB_RS04415 0.76 +0.5 927,971 - AMB_RS04415 0.76 +0.1 928,264 + -0.1 928,625 + AMB_RS04420 0.43 -4.1 928,625 + AMB_RS04420 0.43 -0.1 928,625 + AMB_RS04420 0.43 -0.2 928,625 + AMB_RS04420 0.43 -0.3 928,625 + AMB_RS04420 0.43 -1.7 928,625 + AMB_RS04420 0.43 -0.1 928,626 - AMB_RS04420 0.43 +0.9 928,733 + AMB_RS04420 0.60 +0.6 928,733 + AMB_RS04420 0.60 +0.4 928,733 + AMB_RS04420 0.60 -0.1 928,733 + AMB_RS04420 0.60 -1.0 928,733 + AMB_RS04420 0.60 -0.1 928,733 + AMB_RS04420 0.60 -0.2 928,733 + AMB_RS04420 0.60 +0.4 928,734 - AMB_RS04420 0.61 -0.5 928,734 - AMB_RS04420 0.61 -1.4 928,734 - AMB_RS04420 0.61 +1.4 928,734 - AMB_RS04420 0.61 +0.2 928,734 - AMB_RS04420 0.61 -2.4 928,764 - AMB_RS04420 0.66 +0.4 929,091 + -0.3 929,091 + -0.3 929,091 + +0.1 929,091 + -1.6 929,091 + +0.4 929,092 - +0.2 929,092 - -0.6 929,092 - -1.6 929,092 - -0.4 929,092 - +0.9
Or see this region's nucleotide sequence