Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04320

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04315 and AMB_RS04320 are separated by 62 nucleotidesAMB_RS04320 and AMB_RS04325 are separated by 3 nucleotidesAMB_RS04325 and AMB_RS04330 overlap by 11 nucleotides AMB_RS04315: AMB_RS04315 - PAS domain S-box protein, at 907,203 to 909,743 _RS04315 AMB_RS04320: AMB_RS04320 - DNA-binding response regulator, at 909,806 to 910,528 _RS04320 AMB_RS04325: AMB_RS04325 - TetR/AcrR family transcriptional regulator, at 910,532 to 911,140 _RS04325 AMB_RS04330: AMB_RS04330 - xanthine and CO dehydrogenase maturation factor, at 911,130 to 911,909 _RS04330 Position (kb) 909 910 911Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 908.920 kb on - strand, within AMB_RS04315at 908.920 kb on - strand, within AMB_RS04315at 909.135 kb on + strand, within AMB_RS04315at 909.136 kb on - strand, within AMB_RS04315at 909.136 kb on - strand, within AMB_RS04315at 909.170 kb on - strand, within AMB_RS04315at 909.170 kb on - strand, within AMB_RS04315at 909.559 kb on - strandat 909.606 kb on + strandat 909.606 kb on + strandat 909.607 kb on - strandat 909.607 kb on - strandat 909.607 kb on - strandat 909.607 kb on - strandat 909.607 kb on - strandat 909.679 kb on + strandat 909.680 kb on - strandat 909.688 kb on + strandat 909.689 kb on - strandat 909.762 kb on - strandat 909.817 kb on - strandat 909.854 kb on - strandat 909.854 kb on - strandat 909.863 kb on + strandat 909.863 kb on + strandat 910.097 kb on + strand, within AMB_RS04320at 910.097 kb on + strand, within AMB_RS04320at 910.097 kb on + strand, within AMB_RS04320at 910.098 kb on - strand, within AMB_RS04320at 910.379 kb on + strand, within AMB_RS04320at 910.390 kb on + strand, within AMB_RS04320at 910.391 kb on - strand, within AMB_RS04320at 910.391 kb on - strand, within AMB_RS04320at 910.391 kb on - strand, within AMB_RS04320at 910.481 kb on + strandat 910.482 kb on - strandat 910.482 kb on - strandat 910.482 kb on - strandat 910.527 kb on - strandat 910.604 kb on + strand, within AMB_RS04325at 910.605 kb on - strand, within AMB_RS04325at 910.605 kb on - strand, within AMB_RS04325at 910.676 kb on + strand, within AMB_RS04325at 910.676 kb on + strand, within AMB_RS04325at 910.676 kb on + strand, within AMB_RS04325at 910.677 kb on - strand, within AMB_RS04325at 910.677 kb on - strand, within AMB_RS04325at 910.709 kb on + strand, within AMB_RS04325at 910.710 kb on - strand, within AMB_RS04325at 910.729 kb on + strand, within AMB_RS04325at 910.729 kb on + strand, within AMB_RS04325at 910.829 kb on + strand, within AMB_RS04325at 910.829 kb on + strand, within AMB_RS04325at 910.830 kb on - strand, within AMB_RS04325at 910.830 kb on - strand, within AMB_RS04325at 910.899 kb on - strand, within AMB_RS04325at 910.899 kb on - strand, within AMB_RS04325at 910.929 kb on - strand, within AMB_RS04325at 911.009 kb on + strand, within AMB_RS04325at 911.009 kb on + strand, within AMB_RS04325at 911.010 kb on - strand, within AMB_RS04325at 911.093 kb on + strandat 911.093 kb on + strandat 911.094 kb on - strandat 911.094 kb on - strandat 911.094 kb on - strandat 911.274 kb on + strand, within AMB_RS04330at 911.274 kb on + strand, within AMB_RS04330at 911.274 kb on + strand, within AMB_RS04330at 911.275 kb on - strand, within AMB_RS04330at 911.275 kb on - strand, within AMB_RS04330

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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908,920 - AMB_RS04315 0.68 -1.7
908,920 - AMB_RS04315 0.68 +0.0
909,135 + AMB_RS04315 0.76 +1.4
909,136 - AMB_RS04315 0.76 +1.0
909,136 - AMB_RS04315 0.76 -0.3
909,170 - AMB_RS04315 0.77 -1.4
909,170 - AMB_RS04315 0.77 -0.4
909,559 - -1.6
909,606 + -0.9
909,606 + +0.6
909,607 - -0.2
909,607 - -1.1
909,607 - +0.1
909,607 - -2.0
909,607 - +0.3
909,679 + -0.9
909,680 - -3.0
909,688 + +0.4
909,689 - -0.0
909,762 - +0.4
909,817 - -1.6
909,854 - -0.3
909,854 - -1.0
909,863 + -0.3
909,863 + +0.1
910,097 + AMB_RS04320 0.40 -0.1
910,097 + AMB_RS04320 0.40 +0.7
910,097 + AMB_RS04320 0.40 -1.4
910,098 - AMB_RS04320 0.40 -0.6
910,379 + AMB_RS04320 0.79 -0.3
910,390 + AMB_RS04320 0.81 +1.4
910,391 - AMB_RS04320 0.81 -0.6
910,391 - AMB_RS04320 0.81 -2.0
910,391 - AMB_RS04320 0.81 -1.7
910,481 + -1.2
910,482 - -0.8
910,482 - -0.6
910,482 - -0.0
910,527 - -1.4
910,604 + AMB_RS04325 0.12 +0.6
910,605 - AMB_RS04325 0.12 -1.4
910,605 - AMB_RS04325 0.12 +0.1
910,676 + AMB_RS04325 0.24 -0.6
910,676 + AMB_RS04325 0.24 -1.6
910,676 + AMB_RS04325 0.24 -1.0
910,677 - AMB_RS04325 0.24 -1.7
910,677 - AMB_RS04325 0.24 +1.9
910,709 + AMB_RS04325 0.29 -1.4
910,710 - AMB_RS04325 0.29 -0.3
910,729 + AMB_RS04325 0.32 +0.8
910,729 + AMB_RS04325 0.32 -1.7
910,829 + AMB_RS04325 0.49 +0.4
910,829 + AMB_RS04325 0.49 -0.2
910,830 - AMB_RS04325 0.49 -1.7
910,830 - AMB_RS04325 0.49 -2.5
910,899 - AMB_RS04325 0.60 -0.1
910,899 - AMB_RS04325 0.60 -2.4
910,929 - AMB_RS04325 0.65 +0.5
911,009 + AMB_RS04325 0.78 -2.5
911,009 + AMB_RS04325 0.78 -0.6
911,010 - AMB_RS04325 0.78 -2.0
911,093 + +0.2
911,093 + -1.1
911,094 - -0.3
911,094 - -0.3
911,094 - -0.8
911,274 + AMB_RS04330 0.18 -0.5
911,274 + AMB_RS04330 0.18 -0.2
911,274 + AMB_RS04330 0.18 +0.1
911,275 - AMB_RS04330 0.19 +0.2
911,275 - AMB_RS04330 0.19 -1.4

Or see this region's nucleotide sequence