Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04105

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04095 and AMB_RS04100 are separated by 132 nucleotidesAMB_RS04100 and AMB_RS04105 are separated by 3 nucleotidesAMB_RS04105 and AMB_RS04110 are separated by 140 nucleotides AMB_RS04095: AMB_RS04095 - 4-hydroxy-2-oxoheptanedioate aldolase, at 859,171 to 859,974 _RS04095 AMB_RS04100: AMB_RS04100 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 860,107 to 860,913 _RS04100 AMB_RS04105: AMB_RS04105 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 860,917 to 861,306 _RS04105 AMB_RS04110: AMB_RS04110 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 861,447 to 862,310 _RS04110 Position (kb) 860 861 862Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 860.044 kb on - strandat 860.102 kb on + strandat 860.102 kb on + strandat 860.102 kb on + strandat 860.103 kb on - strandat 860.103 kb on - strandat 860.103 kb on - strandat 860.109 kb on - strandat 860.145 kb on - strandat 860.333 kb on + strand, within AMB_RS04100at 860.333 kb on + strand, within AMB_RS04100at 860.333 kb on + strand, within AMB_RS04100at 860.333 kb on + strand, within AMB_RS04100at 860.333 kb on + strand, within AMB_RS04100at 860.334 kb on - strand, within AMB_RS04100at 860.334 kb on - strand, within AMB_RS04100at 860.334 kb on - strand, within AMB_RS04100at 860.334 kb on - strand, within AMB_RS04100at 860.513 kb on + strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.793 kb on - strand, within AMB_RS04100at 860.981 kb on + strand, within AMB_RS04105at 860.982 kb on - strand, within AMB_RS04105at 860.982 kb on - strand, within AMB_RS04105at 861.017 kb on + strand, within AMB_RS04105at 861.018 kb on - strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.284 kb on + strandat 861.285 kb on - strandat 861.285 kb on - strandat 861.502 kb on + strandat 861.502 kb on + strandat 861.532 kb on + strandat 861.532 kb on + strandat 861.532 kb on + strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.607 kb on + strand, within AMB_RS04110at 861.607 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.892 kb on + strand, within AMB_RS04110at 861.893 kb on - strand, within AMB_RS04110at 861.934 kb on + strand, within AMB_RS04110at 861.935 kb on - strand, within AMB_RS04110at 862.042 kb on + strand, within AMB_RS04110at 862.042 kb on + strand, within AMB_RS04110at 862.042 kb on + strand, within AMB_RS04110at 862.043 kb on - strand, within AMB_RS04110at 862.043 kb on - strand, within AMB_RS04110at 862.121 kb on - strand, within AMB_RS04110at 862.121 kb on - strand, within AMB_RS04110at 862.261 kb on + strandat 862.261 kb on + strandat 862.261 kb on + strandat 862.261 kb on + strandat 862.262 kb on - strandat 862.262 kb on - strandat 862.262 kb on - strandat 862.262 kb on - strandat 862.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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860,044 - -1.4
860,102 + -2.6
860,102 + -2.9
860,102 + -0.6
860,103 - +0.5
860,103 - -1.6
860,103 - +0.2
860,109 - +0.1
860,145 - +0.4
860,333 + AMB_RS04100 0.28 -1.6
860,333 + AMB_RS04100 0.28 -0.9
860,333 + AMB_RS04100 0.28 +0.5
860,333 + AMB_RS04100 0.28 -0.9
860,333 + AMB_RS04100 0.28 -1.1
860,334 - AMB_RS04100 0.28 +0.5
860,334 - AMB_RS04100 0.28 +0.2
860,334 - AMB_RS04100 0.28 -1.9
860,334 - AMB_RS04100 0.28 +0.4
860,513 + AMB_RS04100 0.50 +0.0
860,514 - AMB_RS04100 0.50 +1.4
860,514 - AMB_RS04100 0.50 -0.4
860,514 - AMB_RS04100 0.50 -0.2
860,514 - AMB_RS04100 0.50 +0.3
860,514 - AMB_RS04100 0.50 -1.6
860,514 - AMB_RS04100 0.50 -0.9
860,514 - AMB_RS04100 0.50 -0.9
860,793 - AMB_RS04100 0.85 +1.4
860,981 + AMB_RS04105 0.16 -1.1
860,982 - AMB_RS04105 0.17 -0.3
860,982 - AMB_RS04105 0.17 -0.2
861,017 + AMB_RS04105 0.26 +0.4
861,018 - AMB_RS04105 0.26 -0.0
861,155 + AMB_RS04105 0.61 -1.1
861,155 + AMB_RS04105 0.61 -2.8
861,155 + AMB_RS04105 0.61 -0.5
861,155 + AMB_RS04105 0.61 -0.6
861,155 + AMB_RS04105 0.61 -1.9
861,155 + AMB_RS04105 0.61 -1.1
861,155 + AMB_RS04105 0.61 -3.1
861,155 + AMB_RS04105 0.61 -0.3
861,155 + AMB_RS04105 0.61 -3.7
861,155 + AMB_RS04105 0.61 -0.1
861,156 - AMB_RS04105 0.61 -1.6
861,156 - AMB_RS04105 0.61 -0.0
861,156 - AMB_RS04105 0.61 -2.0
861,156 - AMB_RS04105 0.61 +0.4
861,156 - AMB_RS04105 0.61 +0.2
861,156 - AMB_RS04105 0.61 +0.2
861,284 + -0.2
861,285 - +1.4
861,285 - +0.6
861,502 + -0.4
861,502 + +0.5
861,532 + +0.0
861,532 + +0.4
861,532 + -0.1
861,533 - +0.4
861,533 - +0.5
861,533 - -2.1
861,533 - +0.4
861,533 - +0.4
861,607 + AMB_RS04110 0.19 +0.4
861,607 + AMB_RS04110 0.19 -2.1
861,685 + AMB_RS04110 0.28 +1.4
861,685 + AMB_RS04110 0.28 -1.6
861,685 + AMB_RS04110 0.28 +0.1
861,685 + AMB_RS04110 0.28 -2.1
861,686 - AMB_RS04110 0.28 -0.1
861,686 - AMB_RS04110 0.28 +0.6
861,686 - AMB_RS04110 0.28 -0.2
861,686 - AMB_RS04110 0.28 -0.2
861,892 + AMB_RS04110 0.52 -4.1
861,893 - AMB_RS04110 0.52 +0.1
861,934 + AMB_RS04110 0.56 -0.0
861,935 - AMB_RS04110 0.56 -1.9
862,042 + AMB_RS04110 0.69 -0.6
862,042 + AMB_RS04110 0.69 -0.1
862,042 + AMB_RS04110 0.69 -0.0
862,043 - AMB_RS04110 0.69 +1.0
862,043 - AMB_RS04110 0.69 -0.4
862,121 - AMB_RS04110 0.78 -1.9
862,121 - AMB_RS04110 0.78 -0.1
862,261 + -2.3
862,261 + +0.2
862,261 + -0.9
862,261 + +1.4
862,262 - -0.1
862,262 - -0.2
862,262 - -1.9
862,262 - -0.1
862,305 - +0.8

Or see this region's nucleotide sequence