Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03985 and AMB_RS03990 are separated by 1 nucleotides AMB_RS03990 and AMB_RS03995 overlap by 4 nucleotides
AMB_RS03985: AMB_RS03985 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase, at 835,689 to 837,155
_RS03985
AMB_RS03990: AMB_RS03990 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 837,157 to 837,618
_RS03990
AMB_RS03995: AMB_RS03995 - tRNA epoxyqueuosine(34) reductase QueG, at 837,615 to 838,697
_RS03995
Position (kb) 837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 837.268 kb on + strand, within AMB_RS03990 at 837.268 kb on + strand, within AMB_RS03990 at 837.269 kb on - strand, within AMB_RS03990 at 837.269 kb on - strand, within AMB_RS03990 at 837.269 kb on - strand, within AMB_RS03990 at 837.352 kb on + strand, within AMB_RS03990 at 837.760 kb on - strand, within AMB_RS03995 at 837.876 kb on + strand, within AMB_RS03995 at 837.876 kb on + strand, within AMB_RS03995 at 837.876 kb on + strand, within AMB_RS03995 at 837.877 kb on - strand, within AMB_RS03995 at 837.877 kb on - strand, within AMB_RS03995 at 837.877 kb on - strand, within AMB_RS03995 at 837.877 kb on - strand, within AMB_RS03995 at 837.929 kb on + strand, within AMB_RS03995 at 837.939 kb on + strand, within AMB_RS03995 at 837.940 kb on - strand, within AMB_RS03995 at 837.940 kb on - strand, within AMB_RS03995 at 837.940 kb on - strand, within AMB_RS03995 at 837.957 kb on + strand, within AMB_RS03995 at 838.112 kb on + strand, within AMB_RS03995 at 838.290 kb on + strand, within AMB_RS03995 at 838.291 kb on - strand, within AMB_RS03995 at 838.356 kb on + strand, within AMB_RS03995 at 838.356 kb on + strand, within AMB_RS03995 at 838.356 kb on + strand, within AMB_RS03995 at 838.533 kb on + strand, within AMB_RS03995
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 837,268 + AMB_RS03990 0.24 -1.9 837,268 + AMB_RS03990 0.24 +0.6 837,269 - AMB_RS03990 0.24 -0.1 837,269 - AMB_RS03990 0.24 +0.3 837,269 - AMB_RS03990 0.24 -1.7 837,352 + AMB_RS03990 0.42 +1.4 837,760 - AMB_RS03995 0.13 -0.9 837,876 + AMB_RS03995 0.24 -1.6 837,876 + AMB_RS03995 0.24 -1.5 837,876 + AMB_RS03995 0.24 +0.3 837,877 - AMB_RS03995 0.24 -0.6 837,877 - AMB_RS03995 0.24 -0.9 837,877 - AMB_RS03995 0.24 -1.7 837,877 - AMB_RS03995 0.24 -2.0 837,929 + AMB_RS03995 0.29 +0.2 837,939 + AMB_RS03995 0.30 -2.9 837,940 - AMB_RS03995 0.30 -0.2 837,940 - AMB_RS03995 0.30 -2.0 837,940 - AMB_RS03995 0.30 +0.4 837,957 + AMB_RS03995 0.32 -0.4 838,112 + AMB_RS03995 0.46 -1.7 838,290 + AMB_RS03995 0.62 -0.2 838,291 - AMB_RS03995 0.62 -2.7 838,356 + AMB_RS03995 0.68 -0.0 838,356 + AMB_RS03995 0.68 +0.9 838,356 + AMB_RS03995 0.68 -1.1 838,533 + AMB_RS03995 0.85 -0.1
Or see this region's nucleotide sequence