Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03220 and AMB_RS03225 are separated by 62 nucleotides AMB_RS03225 and AMB_RS03230 are separated by 287 nucleotides AMB_RS03230 and AMB_RS03235 are separated by 7 nucleotides
AMB_RS03220: AMB_RS03220 - two-component sensor histidine kinase, at 672,161 to 674,695
_RS03220
AMB_RS03225: AMB_RS03225 - DedA family protein, at 674,758 to 675,336
_RS03225
AMB_RS03230: AMB_RS03230 - hypothetical protein, at 675,624 to 676,058
_RS03230
AMB_RS03235: AMB_RS03235 - flagellum-specific ATP synthase FliI, at 676,066 to 677,418
_RS03235
Position (kb) 674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 673.950 kb on + strand, within AMB_RS03220 at 673.950 kb on + strand, within AMB_RS03220 at 673.950 kb on + strand, within AMB_RS03220 at 673.951 kb on - strand, within AMB_RS03220 at 673.951 kb on - strand, within AMB_RS03220 at 673.951 kb on - strand, within AMB_RS03220 at 674.012 kb on + strand, within AMB_RS03220 at 674.012 kb on + strand, within AMB_RS03220 at 674.013 kb on - strand, within AMB_RS03220 at 674.013 kb on - strand, within AMB_RS03220 at 674.013 kb on - strand, within AMB_RS03220 at 674.013 kb on - strand, within AMB_RS03220 at 674.013 kb on - strand, within AMB_RS03220 at 674.383 kb on - strand, within AMB_RS03220 at 674.726 kb on + strand at 674.727 kb on - strand at 675.335 kb on - strand at 675.335 kb on - strand at 675.346 kb on + strand at 675.350 kb on + strand at 675.350 kb on + strand at 675.351 kb on - strand at 675.351 kb on - strand at 675.360 kb on + strand at 675.360 kb on + strand at 675.411 kb on + strand at 675.417 kb on - strand at 675.543 kb on - strand at 675.615 kb on + strand at 675.615 kb on + strand at 675.615 kb on + strand at 675.616 kb on - strand at 675.616 kb on - strand at 675.746 kb on - strand, within AMB_RS03230 at 675.871 kb on + strand, within AMB_RS03230 at 675.871 kb on + strand, within AMB_RS03230 at 675.872 kb on - strand, within AMB_RS03230 at 675.872 kb on - strand, within AMB_RS03230 at 675.872 kb on - strand, within AMB_RS03230 at 675.872 kb on - strand, within AMB_RS03230 at 676.067 kb on + strand at 676.067 kb on + strand at 676.068 kb on - strand at 676.127 kb on + strand at 676.127 kb on + strand at 676.128 kb on - strand at 676.128 kb on - strand at 676.128 kb on - strand at 676.128 kb on - strand at 676.191 kb on - strand at 676.193 kb on + strand at 676.194 kb on - strand at 676.194 kb on - strand at 676.271 kb on + strand, within AMB_RS03235 at 676.272 kb on - strand, within AMB_RS03235
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 673,950 + AMB_RS03220 0.71 +1.5 673,950 + AMB_RS03220 0.71 +0.5 673,950 + AMB_RS03220 0.71 +0.1 673,951 - AMB_RS03220 0.71 -2.8 673,951 - AMB_RS03220 0.71 -0.4 673,951 - AMB_RS03220 0.71 +0.3 674,012 + AMB_RS03220 0.73 -1.3 674,012 + AMB_RS03220 0.73 -2.3 674,013 - AMB_RS03220 0.73 -1.1 674,013 - AMB_RS03220 0.73 -1.1 674,013 - AMB_RS03220 0.73 +0.1 674,013 - AMB_RS03220 0.73 +0.1 674,013 - AMB_RS03220 0.73 -0.4 674,383 - AMB_RS03220 0.88 -1.1 674,726 + +0.1 674,727 - -2.1 675,335 - -0.6 675,335 - +0.1 675,346 + -0.8 675,350 + +0.4 675,350 + -1.7 675,351 - -0.1 675,351 - -2.6 675,360 + -0.7 675,360 + -2.0 675,411 + -2.3 675,417 - -0.4 675,543 - -0.5 675,615 + +0.8 675,615 + +1.5 675,615 + -2.3 675,616 - -1.3 675,616 - -0.1 675,746 - AMB_RS03230 0.28 -0.5 675,871 + AMB_RS03230 0.57 -0.1 675,871 + AMB_RS03230 0.57 -1.8 675,872 - AMB_RS03230 0.57 -1.4 675,872 - AMB_RS03230 0.57 -3.7 675,872 - AMB_RS03230 0.57 -1.5 675,872 - AMB_RS03230 0.57 -1.8 676,067 + -1.3 676,067 + +0.1 676,068 - +0.4 676,127 + -2.2 676,127 + +0.0 676,128 - -1.5 676,128 - -2.1 676,128 - -0.1 676,128 - +1.5 676,191 - +0.3 676,193 + -1.3 676,194 - +0.4 676,194 - +0.5 676,271 + AMB_RS03235 0.15 -2.0 676,272 - AMB_RS03235 0.15 +0.5
Or see this region's nucleotide sequence