Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03175

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03165 and AMB_RS03170 are separated by 39 nucleotidesAMB_RS03170 and AMB_RS03175 are separated by 29 nucleotidesAMB_RS03175 and AMB_RS03180 are separated by 15 nucleotidesAMB_RS03180 and AMB_RS03185 are separated by 1 nucleotides AMB_RS03165: AMB_RS03165 - flagellar basal body rod protein FlgB, at 659,555 to 659,956 _RS03165 AMB_RS03170: AMB_RS03170 - flagellar basal body rod protein FlgC, at 659,996 to 660,406 _RS03170 AMB_RS03175: AMB_RS03175 - flagellar hook-basal body protein FliE, at 660,436 to 660,747 _RS03175 AMB_RS03180: AMB_RS03180 - flagellar biosynthetic protein FliQ, at 660,763 to 661,032 _RS03180 AMB_RS03185: AMB_RS03185 - flagellar type III secretion system protein FliR, at 661,034 to 661,798 _RS03185 Position (kb) 660 661Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 659.469 kb on - strandat 659.478 kb on + strandat 659.479 kb on - strandat 659.495 kb on + strandat 659.532 kb on + strandat 659.532 kb on + strandat 659.558 kb on + strandat 659.558 kb on + strandat 659.558 kb on + strandat 659.559 kb on - strandat 659.653 kb on + strand, within AMB_RS03165at 659.653 kb on + strand, within AMB_RS03165at 659.664 kb on - strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.859 kb on + strand, within AMB_RS03165at 659.860 kb on - strand, within AMB_RS03165at 659.860 kb on - strand, within AMB_RS03165at 659.888 kb on + strand, within AMB_RS03165at 659.888 kb on + strand, within AMB_RS03165at 659.888 kb on + strand, within AMB_RS03165at 659.889 kb on - strand, within AMB_RS03165at 659.889 kb on - strand, within AMB_RS03165at 659.919 kb on - strandat 659.955 kb on - strandat 660.016 kb on + strandat 660.269 kb on + strand, within AMB_RS03170at 660.269 kb on + strand, within AMB_RS03170at 660.269 kb on + strand, within AMB_RS03170at 660.269 kb on + strand, within AMB_RS03170at 660.270 kb on - strand, within AMB_RS03170at 660.270 kb on - strand, within AMB_RS03170at 660.270 kb on - strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.336 kb on - strand, within AMB_RS03170at 660.336 kb on - strand, within AMB_RS03170at 660.469 kb on + strand, within AMB_RS03175at 660.470 kb on - strand, within AMB_RS03175at 660.470 kb on - strand, within AMB_RS03175at 660.471 kb on + strand, within AMB_RS03175at 660.471 kb on + strand, within AMB_RS03175at 660.472 kb on - strand, within AMB_RS03175at 660.472 kb on - strand, within AMB_RS03175at 660.718 kb on + strandat 660.718 kb on + strandat 660.719 kb on - strandat 660.719 kb on - strandat 660.719 kb on - strandat 660.720 kb on + strandat 660.959 kb on + strand, within AMB_RS03180at 660.960 kb on - strand, within AMB_RS03180at 661.084 kb on + strandat 661.085 kb on - strandat 661.085 kb on - strandat 661.085 kb on - strandat 661.155 kb on + strand, within AMB_RS03185at 661.277 kb on + strand, within AMB_RS03185at 661.278 kb on - strand, within AMB_RS03185at 661.278 kb on - strand, within AMB_RS03185at 661.278 kb on - strand, within AMB_RS03185at 661.340 kb on + strand, within AMB_RS03185at 661.420 kb on + strand, within AMB_RS03185at 661.423 kb on + strand, within AMB_RS03185at 661.454 kb on - strand, within AMB_RS03185at 661.454 kb on - strand, within AMB_RS03185at 661.490 kb on + strand, within AMB_RS03185at 661.490 kb on + strand, within AMB_RS03185at 661.490 kb on + strand, within AMB_RS03185at 661.490 kb on + strand, within AMB_RS03185at 661.491 kb on - strand, within AMB_RS03185at 661.491 kb on - strand, within AMB_RS03185at 661.491 kb on - strand, within AMB_RS03185at 661.493 kb on + strand, within AMB_RS03185at 661.493 kb on + strand, within AMB_RS03185at 661.493 kb on + strand, within AMB_RS03185at 661.493 kb on + strand, within AMB_RS03185at 661.493 kb on + strand, within AMB_RS03185at 661.493 kb on + strand, within AMB_RS03185at 661.493 kb on + strand, within AMB_RS03185at 661.493 kb on + strand, within AMB_RS03185at 661.493 kb on + strand, within AMB_RS03185at 661.494 kb on - strand, within AMB_RS03185at 661.494 kb on - strand, within AMB_RS03185at 661.494 kb on - strand, within AMB_RS03185at 661.494 kb on - strand, within AMB_RS03185at 661.532 kb on + strand, within AMB_RS03185at 661.532 kb on + strand, within AMB_RS03185at 661.545 kb on + strand, within AMB_RS03185at 661.558 kb on + strand, within AMB_RS03185at 661.615 kb on - strand, within AMB_RS03185at 661.615 kb on - strand, within AMB_RS03185at 661.615 kb on - strand, within AMB_RS03185at 661.615 kb on - strand, within AMB_RS03185at 661.622 kb on + strand, within AMB_RS03185at 661.622 kb on + strand, within AMB_RS03185at 661.622 kb on + strand, within AMB_RS03185at 661.622 kb on + strand, within AMB_RS03185at 661.623 kb on - strand, within AMB_RS03185at 661.623 kb on - strand, within AMB_RS03185at 661.681 kb on + strand, within AMB_RS03185

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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659,469 - +0.0
659,478 + -1.1
659,479 - -0.5
659,495 + -0.5
659,532 + +0.1
659,532 + +0.1
659,558 + -0.2
659,558 + -0.1
659,558 + +0.3
659,559 - -1.7
659,653 + AMB_RS03165 0.24 -0.4
659,653 + AMB_RS03165 0.24 +0.3
659,664 - AMB_RS03165 0.27 +0.4
659,758 + AMB_RS03165 0.50 -1.8
659,758 + AMB_RS03165 0.50 -3.1
659,758 + AMB_RS03165 0.50 +0.4
659,758 + AMB_RS03165 0.50 -0.1
659,758 + AMB_RS03165 0.50 +0.5
659,758 + AMB_RS03165 0.50 -0.8
659,758 + AMB_RS03165 0.50 -2.3
659,758 + AMB_RS03165 0.50 -0.1
659,758 + AMB_RS03165 0.50 +0.2
659,759 - AMB_RS03165 0.51 +0.5
659,759 - AMB_RS03165 0.51 +0.8
659,759 - AMB_RS03165 0.51 +0.6
659,759 - AMB_RS03165 0.51 -0.1
659,759 - AMB_RS03165 0.51 -0.5
659,759 - AMB_RS03165 0.51 +0.5
659,759 - AMB_RS03165 0.51 +0.3
659,759 - AMB_RS03165 0.51 +0.3
659,759 - AMB_RS03165 0.51 +0.1
659,759 - AMB_RS03165 0.51 +0.2
659,759 - AMB_RS03165 0.51 +0.2
659,859 + AMB_RS03165 0.76 -1.1
659,860 - AMB_RS03165 0.76 +0.8
659,860 - AMB_RS03165 0.76 -0.0
659,888 + AMB_RS03165 0.83 -0.1
659,888 + AMB_RS03165 0.83 +0.1
659,888 + AMB_RS03165 0.83 +1.7
659,889 - AMB_RS03165 0.83 -1.1
659,889 - AMB_RS03165 0.83 -0.5
659,919 - -0.8
659,955 - +0.3
660,016 + -0.4
660,269 + AMB_RS03170 0.66 +0.2
660,269 + AMB_RS03170 0.66 -0.4
660,269 + AMB_RS03170 0.66 -0.5
660,269 + AMB_RS03170 0.66 +0.5
660,270 - AMB_RS03170 0.67 +0.3
660,270 - AMB_RS03170 0.67 -0.6
660,270 - AMB_RS03170 0.67 -0.0
660,335 + AMB_RS03170 0.82 -0.1
660,335 + AMB_RS03170 0.82 -1.7
660,335 + AMB_RS03170 0.82 -1.5
660,335 + AMB_RS03170 0.82 -0.8
660,335 + AMB_RS03170 0.82 -2.4
660,335 + AMB_RS03170 0.82 -2.2
660,335 + AMB_RS03170 0.82 -0.2
660,336 - AMB_RS03170 0.83 -1.7
660,336 - AMB_RS03170 0.83 +0.3
660,469 + AMB_RS03175 0.11 +0.3
660,470 - AMB_RS03175 0.11 +0.5
660,470 - AMB_RS03175 0.11 +0.5
660,471 + AMB_RS03175 0.11 -2.8
660,471 + AMB_RS03175 0.11 -1.7
660,472 - AMB_RS03175 0.12 -0.2
660,472 - AMB_RS03175 0.12 -0.9
660,718 + +0.1
660,718 + -0.6
660,719 - +0.4
660,719 - +0.2
660,719 - -0.1
660,720 + +0.4
660,959 + AMB_RS03180 0.73 +0.1
660,960 - AMB_RS03180 0.73 +1.5
661,084 + +0.4
661,085 - -0.8
661,085 - +0.1
661,085 - -0.1
661,155 + AMB_RS03185 0.16 -1.8
661,277 + AMB_RS03185 0.32 -0.5
661,278 - AMB_RS03185 0.32 -0.2
661,278 - AMB_RS03185 0.32 +1.5
661,278 - AMB_RS03185 0.32 -0.1
661,340 + AMB_RS03185 0.40 +0.5
661,420 + AMB_RS03185 0.50 -2.8
661,423 + AMB_RS03185 0.51 -2.5
661,454 - AMB_RS03185 0.55 -0.5
661,454 - AMB_RS03185 0.55 -2.3
661,490 + AMB_RS03185 0.60 -0.8
661,490 + AMB_RS03185 0.60 -3.8
661,490 + AMB_RS03185 0.60 -2.7
661,490 + AMB_RS03185 0.60 +1.0
661,491 - AMB_RS03185 0.60 -1.1
661,491 - AMB_RS03185 0.60 -1.1
661,491 - AMB_RS03185 0.60 +0.5
661,493 + AMB_RS03185 0.60 -3.2
661,493 + AMB_RS03185 0.60 -1.3
661,493 + AMB_RS03185 0.60 -0.2
661,493 + AMB_RS03185 0.60 +0.4
661,493 + AMB_RS03185 0.60 +1.5
661,493 + AMB_RS03185 0.60 -1.1
661,493 + AMB_RS03185 0.60 -0.5
661,493 + AMB_RS03185 0.60 -1.7
661,493 + AMB_RS03185 0.60 -0.2
661,494 - AMB_RS03185 0.60 -0.0
661,494 - AMB_RS03185 0.60 -1.8
661,494 - AMB_RS03185 0.60 -0.1
661,494 - AMB_RS03185 0.60 +0.5
661,532 + AMB_RS03185 0.65 -0.1
661,532 + AMB_RS03185 0.65 +0.5
661,545 + AMB_RS03185 0.67 -1.1
661,558 + AMB_RS03185 0.68 +0.5
661,615 - AMB_RS03185 0.76 -1.3
661,615 - AMB_RS03185 0.76 +0.4
661,615 - AMB_RS03185 0.76 -1.1
661,615 - AMB_RS03185 0.76 -0.5
661,622 + AMB_RS03185 0.77 -0.1
661,622 + AMB_RS03185 0.77 -1.3
661,622 + AMB_RS03185 0.77 +0.3
661,622 + AMB_RS03185 0.77 -2.1
661,623 - AMB_RS03185 0.77 +1.5
661,623 - AMB_RS03185 0.77 -2.0
661,681 + AMB_RS03185 0.85 +0.5

Or see this region's nucleotide sequence