Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03060

Experiment: 30_an_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03050 and AMB_RS03055 are separated by 101 nucleotidesAMB_RS03055 and AMB_RS03060 overlap by 4 nucleotidesAMB_RS03060 and AMB_RS03065 are separated by 0 nucleotides AMB_RS03050: AMB_RS03050 - ribose-phosphate pyrophosphokinase, at 638,226 to 639,158 _RS03050 AMB_RS03055: AMB_RS03055 - hypothetical protein, at 639,260 to 640,081 _RS03055 AMB_RS03060: AMB_RS03060 - peptidoglycan editing factor PgeF, at 640,078 to 640,848 _RS03060 AMB_RS03065: AMB_RS03065 - class I SAM-dependent methyltransferase, at 640,849 to 641,922 _RS03065 Position (kb) 640 641Strain fitness (log2 ratio) -2 -1 0 1at 639.177 kb on - strandat 639.248 kb on - strandat 639.248 kb on - strandat 639.282 kb on - strandat 639.672 kb on + strand, within AMB_RS03055at 639.672 kb on + strand, within AMB_RS03055at 640.148 kb on + strandat 640.149 kb on - strandat 640.238 kb on + strand, within AMB_RS03060at 640.238 kb on + strand, within AMB_RS03060at 640.239 kb on - strand, within AMB_RS03060at 640.352 kb on + strand, within AMB_RS03060at 640.435 kb on - strand, within AMB_RS03060at 640.851 kb on - strandat 640.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_mag_2
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639,177 - -1.1
639,248 - +0.5
639,248 - +0.1
639,282 - -0.5
639,672 + AMB_RS03055 0.50 -0.3
639,672 + AMB_RS03055 0.50 -1.8
640,148 + -0.7
640,149 - -2.4
640,238 + AMB_RS03060 0.21 -2.0
640,238 + AMB_RS03060 0.21 -2.2
640,239 - AMB_RS03060 0.21 +0.8
640,352 + AMB_RS03060 0.36 -2.4
640,435 - AMB_RS03060 0.46 -1.8
640,851 - -2.0
640,851 - -2.4

Or see this region's nucleotide sequence