Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02770 and AMB_RS02775 are separated by 35 nucleotides AMB_RS02775 and AMB_RS02780 are separated by 178 nucleotides AMB_RS02780 and AMB_RS02785 are separated by 154 nucleotides AMB_RS02785 and AMB_RS02790 are separated by 57 nucleotides
AMB_RS02770: AMB_RS02770 - hypothetical protein, at 584,457 to 584,654
_RS02770
AMB_RS02775: AMB_RS02775 - response regulator, at 584,690 to 585,262
_RS02775
AMB_RS02780: AMB_RS02780 - hypothetical protein, at 585,441 to 586,019
_RS02780
AMB_RS02785: AMB_RS02785 - hypothetical protein, at 586,174 to 586,518
_RS02785
AMB_RS02790: AMB_RS02790 - outer membrane receptor protein, at 586,576 to 588,702
_RS02790
Position (kb) 585
586
587 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 585.297 kb on - strand at 585.388 kb on - strand at 585.687 kb on + strand, within AMB_RS02780 at 585.687 kb on + strand, within AMB_RS02780 at 585.687 kb on + strand, within AMB_RS02780 at 585.688 kb on - strand, within AMB_RS02780 at 585.956 kb on + strand, within AMB_RS02780 at 585.956 kb on + strand, within AMB_RS02780 at 585.957 kb on - strand, within AMB_RS02780 at 586.056 kb on + strand at 586.517 kb on - strand at 586.930 kb on + strand, within AMB_RS02790 at 586.930 kb on + strand, within AMB_RS02790 at 586.930 kb on + strand, within AMB_RS02790 at 586.930 kb on + strand, within AMB_RS02790 at 586.931 kb on - strand, within AMB_RS02790 at 586.931 kb on - strand, within AMB_RS02790 at 586.931 kb on - strand, within AMB_RS02790 at 586.932 kb on + strand, within AMB_RS02790 at 586.933 kb on - strand, within AMB_RS02790 at 587.016 kb on + strand, within AMB_RS02790
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 585,297 - -2.1 585,388 - -2.1 585,687 + AMB_RS02780 0.42 +0.5 585,687 + AMB_RS02780 0.42 -0.5 585,687 + AMB_RS02780 0.42 +0.0 585,688 - AMB_RS02780 0.43 -0.1 585,956 + AMB_RS02780 0.89 +0.6 585,956 + AMB_RS02780 0.89 -1.8 585,957 - AMB_RS02780 0.89 +0.8 586,056 + -0.8 586,517 - -1.1 586,930 + AMB_RS02790 0.17 -1.3 586,930 + AMB_RS02790 0.17 +0.4 586,930 + AMB_RS02790 0.17 -4.2 586,930 + AMB_RS02790 0.17 +0.5 586,931 - AMB_RS02790 0.17 -1.5 586,931 - AMB_RS02790 0.17 -0.1 586,931 - AMB_RS02790 0.17 -0.1 586,932 + AMB_RS02790 0.17 +0.1 586,933 - AMB_RS02790 0.17 -0.8 587,016 + AMB_RS02790 0.21 -1.7
Or see this region's nucleotide sequence