Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02720 and AMB_RS02725 are separated by 22 nucleotides AMB_RS02725 and AMB_RS02730 overlap by 2 nucleotides AMB_RS02730 and AMB_RS02735 are separated by 46 nucleotides
AMB_RS02720: AMB_RS02720 - glycosyltransferase family 9 protein, at 569,948 to 571,147
_RS02720
AMB_RS02725: AMB_RS02725 - phospholipid carrier-dependent glycosyltransferase, at 571,170 to 572,732
_RS02725
AMB_RS02730: AMB_RS02730 - hypothetical protein, at 572,731 to 573,156
_RS02730
AMB_RS02735: AMB_RS02735 - nitrate reductase, at 573,203 to 575,758
_RS02735
Position (kb) 571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 571.199 kb on - strand at 571.199 kb on - strand at 571.199 kb on - strand at 571.199 kb on - strand at 571.313 kb on - strand at 571.441 kb on + strand, within AMB_RS02725 at 571.441 kb on + strand, within AMB_RS02725 at 571.445 kb on - strand, within AMB_RS02725 at 571.609 kb on + strand, within AMB_RS02725 at 572.785 kb on + strand, within AMB_RS02730 at 572.785 kb on + strand, within AMB_RS02730 at 572.785 kb on + strand, within AMB_RS02730 at 572.786 kb on - strand, within AMB_RS02730 at 572.787 kb on + strand, within AMB_RS02730 at 572.787 kb on + strand, within AMB_RS02730 at 573.154 kb on + strand at 573.154 kb on + strand at 573.154 kb on + strand at 573.154 kb on + strand at 573.155 kb on - strand at 573.155 kb on - strand at 573.158 kb on + strand at 573.158 kb on + strand at 573.158 kb on + strand at 573.158 kb on + strand at 573.159 kb on - strand at 573.159 kb on - strand at 573.159 kb on - strand at 573.159 kb on - strand at 573.159 kb on - strand at 573.159 kb on - strand at 573.160 kb on + strand at 573.160 kb on + strand at 573.160 kb on + strand at 573.160 kb on + strand at 573.161 kb on - strand at 573.161 kb on - strand at 573.199 kb on + strand at 573.199 kb on + strand at 573.200 kb on - strand at 573.200 kb on - strand at 573.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 571,199 - -0.1 571,199 - -0.5 571,199 - -1.7 571,199 - -0.4 571,313 - +0.8 571,441 + AMB_RS02725 0.17 -0.5 571,441 + AMB_RS02725 0.17 -0.1 571,445 - AMB_RS02725 0.18 -0.6 571,609 + AMB_RS02725 0.28 -2.6 572,785 + AMB_RS02730 0.13 -0.7 572,785 + AMB_RS02730 0.13 +0.9 572,785 + AMB_RS02730 0.13 +0.5 572,786 - AMB_RS02730 0.13 -3.4 572,787 + AMB_RS02730 0.13 -2.1 572,787 + AMB_RS02730 0.13 -2.6 573,154 + -0.1 573,154 + -3.0 573,154 + -0.6 573,154 + -0.5 573,155 - +0.5 573,155 - -0.5 573,158 + -0.8 573,158 + +1.5 573,158 + +0.3 573,158 + -1.7 573,159 - -0.1 573,159 - -1.0 573,159 - -1.3 573,159 - +0.0 573,159 - -1.8 573,159 - -0.1 573,160 + -1.7 573,160 + -0.0 573,160 + -0.6 573,160 + -0.7 573,161 - -1.0 573,161 - -0.2 573,199 + -1.3 573,199 + -2.4 573,200 - -0.5 573,200 - -1.7 573,200 - +0.5
Or see this region's nucleotide sequence