Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02700 and AMB_RS02705 are separated by 95 nucleotides AMB_RS02705 and AMB_RS02710 are separated by 194 nucleotides
AMB_RS02700: AMB_RS02700 - carboxypeptidase, at 565,137 to 567,248
_RS02700
AMB_RS02705: AMB_RS02705 - ribbon-helix-helix protein, CopG family, at 567,344 to 567,547
_RS02705
AMB_RS02710: AMB_RS02710 - 2-nitropropane dioxygenase, at 567,742 to 569,139
_RS02710
Position (kb) 567
568 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 566.506 kb on + strand, within AMB_RS02700 at 566.506 kb on + strand, within AMB_RS02700 at 566.551 kb on + strand, within AMB_RS02700 at 566.566 kb on + strand, within AMB_RS02700 at 566.566 kb on + strand, within AMB_RS02700 at 566.739 kb on + strand, within AMB_RS02700 at 566.782 kb on + strand, within AMB_RS02700 at 566.969 kb on - strand, within AMB_RS02700 at 566.972 kb on - strand, within AMB_RS02700 at 567.259 kb on - strand at 567.259 kb on - strand at 567.308 kb on + strand at 567.308 kb on + strand at 567.309 kb on - strand at 567.309 kb on - strand at 567.309 kb on - strand at 567.309 kb on - strand at 567.309 kb on - strand at 567.329 kb on - strand at 567.455 kb on + strand, within AMB_RS02705 at 567.456 kb on - strand, within AMB_RS02705 at 567.456 kb on - strand, within AMB_RS02705 at 567.456 kb on - strand, within AMB_RS02705 at 567.456 kb on - strand, within AMB_RS02705 at 567.627 kb on + strand at 567.723 kb on - strand at 567.743 kb on + strand at 567.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 566,506 + AMB_RS02700 0.65 -0.2 566,506 + AMB_RS02700 0.65 +0.5 566,551 + AMB_RS02700 0.67 -1.8 566,566 + AMB_RS02700 0.68 -1.7 566,566 + AMB_RS02700 0.68 -3.1 566,739 + AMB_RS02700 0.76 -0.5 566,782 + AMB_RS02700 0.78 -1.2 566,969 - AMB_RS02700 0.87 -1.5 566,972 - AMB_RS02700 0.87 -0.7 567,259 - -0.8 567,259 - -0.1 567,308 + -0.3 567,308 + -0.8 567,309 - +0.5 567,309 - -0.3 567,309 - -2.3 567,309 - +0.3 567,309 - -0.0 567,329 - +0.4 567,455 + AMB_RS02705 0.54 -1.1 567,456 - AMB_RS02705 0.55 -1.7 567,456 - AMB_RS02705 0.55 -0.4 567,456 - AMB_RS02705 0.55 -1.5 567,456 - AMB_RS02705 0.55 +0.5 567,627 + -0.2 567,723 - -0.3 567,743 + +1.5 567,744 - +0.4
Or see this region's nucleotide sequence