Experiment: 30_an_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02560 and AMB_RS02565 are separated by 130 nucleotides AMB_RS02565 and AMB_RS02570 are separated by 4 nucleotides
AMB_RS02560: AMB_RS02560 - GTP-binding protein, at 530,435 to 531,436
_RS02560
AMB_RS02565: AMB_RS02565 - flagellar biosynthesis protein FlhA, at 531,567 to 533,678
_RS02565
AMB_RS02570: AMB_RS02570 - sigma-54-dependent Fis family transcriptional regulator, at 533,683 to 535,056
_RS02570
Position (kb) 531
532
533
534 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 530.773 kb on - strand, within AMB_RS02560 at 531.154 kb on + strand, within AMB_RS02560 at 531.154 kb on + strand, within AMB_RS02560 at 531.155 kb on - strand, within AMB_RS02560 at 531.427 kb on + strand at 531.427 kb on + strand at 531.427 kb on + strand at 531.427 kb on + strand at 531.428 kb on - strand at 531.428 kb on - strand at 531.428 kb on - strand at 531.428 kb on - strand at 531.428 kb on - strand at 531.428 kb on - strand at 531.667 kb on + strand at 531.667 kb on + strand at 531.929 kb on + strand, within AMB_RS02565 at 532.215 kb on - strand, within AMB_RS02565 at 532.215 kb on - strand, within AMB_RS02565 at 532.216 kb on + strand, within AMB_RS02565 at 532.216 kb on + strand, within AMB_RS02565 at 532.216 kb on + strand, within AMB_RS02565 at 532.216 kb on + strand, within AMB_RS02565 at 532.216 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.399 kb on + strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.400 kb on - strand, within AMB_RS02565 at 532.546 kb on + strand, within AMB_RS02565 at 532.547 kb on - strand, within AMB_RS02565 at 532.687 kb on + strand, within AMB_RS02565 at 532.687 kb on + strand, within AMB_RS02565 at 532.688 kb on - strand, within AMB_RS02565 at 532.798 kb on + strand, within AMB_RS02565 at 532.937 kb on - strand, within AMB_RS02565 at 532.937 kb on - strand, within AMB_RS02565 at 533.684 kb on + strand at 533.684 kb on + strand at 533.684 kb on + strand at 533.684 kb on + strand at 533.684 kb on + strand at 533.685 kb on - strand at 533.685 kb on - strand at 533.685 kb on - strand at 533.685 kb on - strand at 533.685 kb on - strand at 533.747 kb on + strand at 534.134 kb on + strand, within AMB_RS02570 at 534.135 kb on - strand, within AMB_RS02570 at 534.135 kb on - strand, within AMB_RS02570 at 534.228 kb on - strand, within AMB_RS02570 at 534.228 kb on - strand, within AMB_RS02570 at 534.228 kb on - strand, within AMB_RS02570 at 534.228 kb on - strand, within AMB_RS02570 at 534.228 kb on - strand, within AMB_RS02570
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_mag_2 remove 530,773 - AMB_RS02560 0.34 +1.5 531,154 + AMB_RS02560 0.72 -2.3 531,154 + AMB_RS02560 0.72 +0.2 531,155 - AMB_RS02560 0.72 +0.2 531,427 + -3.1 531,427 + -0.5 531,427 + -0.5 531,427 + -0.2 531,428 - -0.1 531,428 - -1.3 531,428 - -1.3 531,428 - -0.8 531,428 - +0.4 531,428 - -0.0 531,667 + +1.5 531,667 + -0.4 531,929 + AMB_RS02565 0.17 +0.4 532,215 - AMB_RS02565 0.31 -0.6 532,215 - AMB_RS02565 0.31 -1.8 532,216 + AMB_RS02565 0.31 -3.0 532,216 + AMB_RS02565 0.31 -1.8 532,216 + AMB_RS02565 0.31 +0.2 532,216 + AMB_RS02565 0.31 -2.3 532,216 + AMB_RS02565 0.31 -0.5 532,399 + AMB_RS02565 0.39 +0.1 532,399 + AMB_RS02565 0.39 -1.7 532,399 + AMB_RS02565 0.39 +0.0 532,399 + AMB_RS02565 0.39 -2.0 532,399 + AMB_RS02565 0.39 +0.4 532,399 + AMB_RS02565 0.39 -0.3 532,399 + AMB_RS02565 0.39 -2.4 532,399 + AMB_RS02565 0.39 +0.5 532,399 + AMB_RS02565 0.39 -0.8 532,399 + AMB_RS02565 0.39 -1.1 532,399 + AMB_RS02565 0.39 +0.1 532,400 - AMB_RS02565 0.39 -2.6 532,400 - AMB_RS02565 0.39 -2.7 532,400 - AMB_RS02565 0.39 -2.1 532,400 - AMB_RS02565 0.39 +0.1 532,400 - AMB_RS02565 0.39 -0.2 532,400 - AMB_RS02565 0.39 +0.2 532,400 - AMB_RS02565 0.39 +0.5 532,400 - AMB_RS02565 0.39 +0.4 532,400 - AMB_RS02565 0.39 -0.1 532,400 - AMB_RS02565 0.39 -1.7 532,400 - AMB_RS02565 0.39 -0.1 532,546 + AMB_RS02565 0.46 -0.5 532,547 - AMB_RS02565 0.46 +0.3 532,687 + AMB_RS02565 0.53 -2.9 532,687 + AMB_RS02565 0.53 -1.1 532,688 - AMB_RS02565 0.53 -2.5 532,798 + AMB_RS02565 0.58 -0.8 532,937 - AMB_RS02565 0.65 -2.7 532,937 - AMB_RS02565 0.65 -0.3 533,684 + -1.7 533,684 + -0.2 533,684 + +0.0 533,684 + -0.8 533,684 + +0.5 533,685 - -1.8 533,685 - -1.5 533,685 - +1.1 533,685 - +0.1 533,685 - +0.2 533,747 + -1.5 534,134 + AMB_RS02570 0.33 -1.1 534,135 - AMB_RS02570 0.33 -0.1 534,135 - AMB_RS02570 0.33 -3.0 534,228 - AMB_RS02570 0.40 -0.8 534,228 - AMB_RS02570 0.40 -1.5 534,228 - AMB_RS02570 0.40 -1.5 534,228 - AMB_RS02570 0.40 +0.1 534,228 - AMB_RS02570 0.40 -0.1
Or see this region's nucleotide sequence